diff --git a/assays/.gitkeep b/assays/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/GCqTOF_targets/isa.assay.xlsx b/assays/GCqTOF_targets/isa.assay.xlsx index b0f78c63340f8a9c3f37e9d6e662d8ceea66e4d9..b4b31ba4fbfeb91c471715a28e16e995bfca01e7 100644 Binary files a/assays/GCqTOF_targets/isa.assay.xlsx and b/assays/GCqTOF_targets/isa.assay.xlsx differ diff --git a/assays/MassHunter_targets/README.md b/assays/MassHunter_targets/README.md index 92b1cbff947379d040a53e6c2e53f84b47c4cf59..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100644 --- a/assays/MassHunter_targets/README.md +++ b/assays/MassHunter_targets/README.md @@ -1,30 +0,0 @@ -# run1_MassHunter_targets - -> This is a placeholder until we have a proper routine to describing `runs` (computations) done with (proprietary or otherwise non-scripted) software. - -## File overview - - ```bash - tree runs/run1_MassHunter_targets/ - - runs/run1_MassHunter_targets/ - ├── QuantReports - │ └── 22-0005_exp001.batch_a.bin - │ ├── 190614_QuantReport_ISTD_DB.ReportStatus.xml - │ ├── 190614_QuantReport_ISTD_DB.xlsx - │ ├── Options.xml - │ ├── batch.results.xsd - │ └── report.results.xml - ├── QuantResults - │ └── 22-0005_exp001.batch_a.bin.batch.bin - └── README.md - ``` - -## File description - -- Directories "QuantReports" and "QuantResults" are automatically created by MassHunter Quant -- [./QuantReports](./QuantReports) -- [./QuantResults](./QuantResults) - - stores only the "batch" binary - - - \ No newline at end of file diff --git a/assays/MassHunter_targets/isa.assay.xlsx b/assays/MassHunter_targets/isa.assay.xlsx index 37028b178f91a5676df049444c6c032cb898e294..29cbe1352183d1506cf674851a380cc67921ee9d 100644 Binary files a/assays/MassHunter_targets/isa.assay.xlsx and b/assays/MassHunter_targets/isa.assay.xlsx differ diff --git a/assays/MassHunter_targets/isa.datapackage.xlsx b/assays/MassHunter_targets/isa.datapackage.xlsx index 56d432fbd3baf8d2c1f06fd4071480736e7818ee..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100644 Binary files a/assays/MassHunter_targets/isa.datapackage.xlsx and b/assays/MassHunter_targets/isa.datapackage.xlsx differ diff --git a/assays/Talinum_RNASeq_minimal/isa.assay.xlsx b/assays/Talinum_RNASeq_minimal/isa.assay.xlsx index be7f4565a9b7425216eb22728a657286696b1e57..ca0e8a7a976d3764b8d7c3c75de6e7561c611eef 100644 Binary files a/assays/Talinum_RNASeq_minimal/isa.assay.xlsx and b/assays/Talinum_RNASeq_minimal/isa.assay.xlsx differ diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index 798391634bb295084fffc2443f204796fa972bc4..b29873ff08ba1971a64aa5ca15677b65b349e922 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ diff --git a/runs/.gitkeep b/runs/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/studies/.gitkeep b/studies/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/studies/TalinumFacultativeCAM/isa.study.xlsx b/studies/TalinumFacultativeCAM/isa.study.xlsx index 96bcec10f2783141e0216d6f03f75b079f5e0ac5..0a83fd2d7f6d0487f700abb76eac92200cf11a71 100644 Binary files a/studies/TalinumFacultativeCAM/isa.study.xlsx and b/studies/TalinumFacultativeCAM/isa.study.xlsx differ diff --git a/studies/TalinumGenomeDraft/README.md b/studies/TalinumGenomeDraft/README.md index b1b803ca1d96feef1834a9832f11e5848bfbb264..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100644 --- a/studies/TalinumGenomeDraft/README.md +++ b/studies/TalinumGenomeDraft/README.md @@ -1,6 +0,0 @@ - -### Talinum Genome ref -File: Talinum.gm.CDS.nt.fa -Source: https://webdav.hhu.de/metdata/agweber/data/Eva_Maleckova-CAM/Genomics/Genome/Talinum-Flye-Polca_v201017/Talinum.gm.CDS.nt.fa -Contributor: Eva Maleckova - https://orcid.org/0000-0001-9062-3516 - diff --git a/studies/TalinumGenomeDraft/isa.study.xlsx b/studies/TalinumGenomeDraft/isa.study.xlsx index 84b3218ada3e1b3451e0f24edb8cd70c885d16c2..46533fae98e156df85017266402d874d204f4009 100644 Binary files a/studies/TalinumGenomeDraft/isa.study.xlsx and b/studies/TalinumGenomeDraft/isa.study.xlsx differ diff --git a/workflows/.gitkeep b/workflows/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391