diff --git a/runs/merged_isa_metadata/run.cwl b/runs/merged_isa_metadata/run.cwl index 978e2404a37e402161073786951b605ec186e28e..2606463c6922034a4518d3420324b8dbce664a7e 100644 --- a/runs/merged_isa_metadata/run.cwl +++ b/runs/merged_isa_metadata/run.cwl @@ -1,5 +1,5 @@ #!/usr/bin/env cwl-runner -cwlVersion: v1.2.0-dev1 +cwlVersion: v1.2.0 class: Workflow inputs: in_isa_study: diff --git a/workflows/merge_isa_metadata/merge_isa_metadata.R b/workflows/merge_isa_metadata/merge_isa_metadata.R index aa074b364b232157525dd835ab3eeef506cbcfc4..a4784c84bc663056058b76b127233fa5cfe531e8 100644 --- a/workflows/merge_isa_metadata/merge_isa_metadata.R +++ b/workflows/merge_isa_metadata/merge_isa_metadata.R @@ -4,7 +4,7 @@ #### CWL-independent tests ################################################ -# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq/" +# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq_adrian/" # in_isa_study <- "studies/TalinumFacultativeCAM/isa.study.xlsx:plant_growth" # in_isa_assay <- "assays/Talinum_RNASeq_minimal/isa.assay.xlsx:2EXT01_RNA:3ASY01_RNASeq" # out_folder <- "runs/merged_isa_metadata" diff --git a/workflows/merge_isa_metadata/workflow.cwl b/workflows/merge_isa_metadata/workflow.cwl index c6066ed7bd71d6a084afde5473f9151e8d657498..743e0f00aaab158b2784551cfc1fcc7486379965 100644 --- a/workflows/merge_isa_metadata/workflow.cwl +++ b/workflows/merge_isa_metadata/workflow.cwl @@ -1,6 +1,6 @@ #!/usr/bin/env cwl-runner -cwlVersion: v1.2.0-dev1 +cwlVersion: v1.2.0 class: CommandLineTool hints: DockerRequirement: