diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..67be41b00e01424f7f4bf00fa40e47060165e7ab Binary files /dev/null and b/.DS_Store differ diff --git a/README.md b/README.md index 741a7c0866583a4256357f88852f7dfd9e1c6846..c1d70b7854ff7c7e0efba4ced629dc71d13bbcc0 100644 --- a/README.md +++ b/README.md @@ -1,13 +1,11 @@ # ARC mininmal Example RNASeq +This is a minimal Example ARC packaging an mRNA-Seq dataset with metadata and computations. -## Notes - -- CWL not yet implemented +## Notes and ToDos - -### isa.assay +### Experimental metadata in isa.assay.xlsx - split GEO SWATE templates into four sheets - 1SPL01_plants - 2EXT01_RNA @@ -15,16 +13,19 @@ - 4COM01_RNASeq -### adding big data via git lfs +### Adding large raw data via git lfs + +1. Before addind the files to the ARC, track them via `git lfs` ``` git lfs track "*.fastq.gz" - git lfs track "01_kallisto_index" ``` -add big data files to respective folder +2. Move / add the large data files to the respective folders + +3. Add them via `git add` ``` git add assays/Talinum_RNASeq_minimal/dataset/ @@ -32,4 +33,8 @@ git add runs/run1/01_kallisto_index ``` +4. Commit + +## To Do's +- CWL not yet implemented diff --git a/assays/.DS_Store b/assays/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..4014df97bda50525385b25430c460c44e64ae1a5 Binary files /dev/null and b/assays/.DS_Store differ