From 2579c34913cc8f561027cd4e07fa1a1a6f75f140 Mon Sep 17 00:00:00 2001
From: Dominik <dominik.brilhaus@hhu.de>
Date: Thu, 11 Nov 2021 10:00:58 +0100
Subject: [PATCH] update README (and test commit)
---
.DS_Store | Bin 0 -> 6148 bytes
README.md | 21 +++++++++++++--------
assays/.DS_Store | Bin 0 -> 6148 bytes
3 files changed, 13 insertions(+), 8 deletions(-)
create mode 100644 .DS_Store
create mode 100644 assays/.DS_Store
diff --git a/.DS_Store b/.DS_Store
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diff --git a/README.md b/README.md
index 741a7c0..c1d70b7 100644
--- a/README.md
+++ b/README.md
@@ -1,13 +1,11 @@
# ARC mininmal Example RNASeq
+This is a minimal Example ARC packaging an mRNA-Seq dataset with metadata and computations.
-## Notes
-
-- CWL not yet implemented
+## Notes and ToDos
-
-### isa.assay
+### Experimental metadata in isa.assay.xlsx
- split GEO SWATE templates into four sheets
- 1SPL01_plants
- 2EXT01_RNA
@@ -15,16 +13,19 @@
- 4COM01_RNASeq
-### adding big data via git lfs
+### Adding large raw data via git lfs
+
+1. Before addind the files to the ARC, track them via `git lfs`
```
git lfs track "*.fastq.gz"
-
git lfs track "01_kallisto_index"
```
-add big data files to respective folder
+2. Move / add the large data files to the respective folders
+
+3. Add them via `git add`
```
git add assays/Talinum_RNASeq_minimal/dataset/
@@ -32,4 +33,8 @@ git add runs/run1/01_kallisto_index
```
+4. Commit
+
+## To Do's
+- CWL not yet implemented
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--
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