diff --git a/workflows/fastqc/fastqc.cwl b/workflows/fastqc/fastqc.cwl
index f0b906a85f919f4547565b27a3254ad4404c8824..1954ad092600ec32cd7074488ff8d1111fe142de 100644
--- a/workflows/fastqc/fastqc.cwl
+++ b/workflows/fastqc/fastqc.cwl
@@ -55,7 +55,7 @@ $namespaces:
   edam: https://edamontology.org/
   s: https://schema.org/
 $schemas:
-  - https://edamontology.org/EDAM_1.18.owl
+  - https://edamontology.org/EDAM_1.25.owl
 
 s:license: https://spdx.org/licenses/GPL-3.0-or-later
 
diff --git a/workflows/kallisto/kallisto-index.cwl b/workflows/kallisto/kallisto-index.cwl
index b43cba7adfe32a26892de9acff2d747d20c4e28f..10f879d61317f9d5f3dfc52f7bef054b9bb3c250 100644
--- a/workflows/kallisto/kallisto-index.cwl
+++ b/workflows/kallisto/kallisto-index.cwl
@@ -81,6 +81,6 @@ $namespaces:
   edam: https://edamontology.org/
   s: https://schema.org/
 $schemas:
-  - https://edamontology.org/EDAM_1.18.owl
+  - https://edamontology.org/EDAM_1.25.owl
 
 s:license: https://spdx.org/licenses/BSD-2-Clause
diff --git a/workflows/kallisto/kallisto-quant.cwl b/workflows/kallisto/kallisto-quant.cwl
index 998c371f230cec6cabb4ea1f194b88510205fa0c..1a8e6eaa87bbcc8a921d40416092d3768ad5ced5 100755
--- a/workflows/kallisto/kallisto-quant.cwl
+++ b/workflows/kallisto/kallisto-quant.cwl
@@ -174,6 +174,6 @@ $namespaces:
   edam: https://edamontology.org/
   s: https://schema.org/
 $schemas:
-  - https://edamontology.org/EDAM_1.18.owl
+  - https://edamontology.org/EDAM_1.25.owl
 
 s:license: https://spdx.org/licenses/BSD-2-Clause