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100644 --- a/runs/kallisto/kallisto_results/DB_165/run_info.json +++ b/runs/kallisto/kallisto_results/DB_165/run_info.json @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:2d0c9832b35d573854206150cdac98d42aa82966041235d46e2a91d9f0ecac8a +oid sha256:42fa5b9c6df5c1b770339aa8cceec7a0276e8875c79cc639f7ea024f88af2434 size 561 diff --git a/runs/kallisto/workflow.yml b/runs/kallisto/workflow.yml index 21d672d49800e00ca07b94c78ef824c7531dcf68..0f8f15d1452b75328f81888b196b8fd19ac97a11 100644 --- a/runs/kallisto/workflow.yml +++ b/runs/kallisto/workflow.yml @@ -34,7 +34,7 @@ InputReadsMultipleSamples: path: ../../assays/Talinum_RNASeq_minimal/dataset/DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz format: edam:format_1930 # FASTQ -numUnderscoresFileName: 1 +numUnderscoresFileName: 2 ### Kallisto quant Parameters isSingle: true