diff --git a/runs/kallisto_collect/README.md b/runs/kallisto_collect/README.md
index b43b9ca2bef787c0e02f178356439e1378bc7723..644698a127f0834a44725ff204d65cbcd39b1461 100644
--- a/runs/kallisto_collect/README.md
+++ b/runs/kallisto_collect/README.md
@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/kallisto_collect
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto_collect
 
 ## Let it flow
 
diff --git a/runs/kallisto_index/README.md b/runs/kallisto_index/README.md
index 577a1e43c503dd13674c74a04fe3a6eb6eb03181..2271f59ce8011456c57cf35c81eb0d954ffc30fa 100644
--- a/runs/kallisto_index/README.md
+++ b/runs/kallisto_index/README.md
@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/kallisto_index
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto_index
 
 ## Let it flow
 
diff --git a/runs/kallisto_quant/README.md b/runs/kallisto_quant/README.md
index 34ee54236040614751867b388188f9e716e11b7b..b3a3ac8bffaa087680fe1d6996d2088ccc2e3e90 100644
--- a/runs/kallisto_quant/README.md
+++ b/runs/kallisto_quant/README.md
@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/kallisto_quant
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto_quant
 
 ## Let it flow
 
diff --git a/runs/kallisto_sleuth/README.md b/runs/kallisto_sleuth/README.md
index 9df2ee4950593a59f32c90c641af71e1210eb4ef..ade0a1e2685107ad77dd88382d2f7c7f57fef203 100644
--- a/runs/kallisto_sleuth/README.md
+++ b/runs/kallisto_sleuth/README.md
@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/kallisto_sleuth
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto_sleuth
 
 ## Let it flow
 
diff --git a/runs/merged_isa_metadata/README.md b/runs/merged_isa_metadata/README.md
index 3f48961eb47733a2aff546f2edb4bf4f62d06a93..d15e984b6c20eae3bc7bdcf9257a861d9709e694 100644
--- a/runs/merged_isa_metadata/README.md
+++ b/runs/merged_isa_metadata/README.md
@@ -3,12 +3,12 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/merged_isa_metadata
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/merged_isa_metadata
 
 
 ## Let it flow
 
 ```bash
 ### run with cwltool
-cwltool --enable-dev run.cwl merge_isa_metadata.yml
+cwltool run.cwl merge_isa_metadata.yml
 ```
diff --git a/runs/shiny_prep/README.md b/runs/shiny_prep/README.md
index e96585792fa1a4cfc2b8a1517f7a8068c8e5d6a4..d27503bc3cc01d16bdb4802d6c6ee5d8e461d958 100644
--- a/runs/shiny_prep/README.md
+++ b/runs/shiny_prep/README.md
@@ -3,7 +3,7 @@
 
 ## First cd into the (runs) folder, with the .yml file
 
-cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq/runs/kallisto_sleuth
+cd /Users/dominikbrilhaus/gitlab_dataplant/samplearc_rnaseq_adrian/runs/kallisto_sleuth
 
 ## Let it flow
 
diff --git a/workflows/kallisto_collect/kallisto_collect.R b/workflows/kallisto_collect/kallisto_collect.R
index 15e176cf8fcd9804a5778a7f2e8dad98eefdcfe9..6c221c29fee6b3df1392bb2878cba7e647e304cf 100644
--- a/workflows/kallisto_collect/kallisto_collect.R
+++ b/workflows/kallisto_collect/kallisto_collect.R
@@ -4,7 +4,7 @@
 #### CWL-independent tests
 ################################################
 
-# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq/"
+# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq_adrian/"
 # in_kallisto_results <- "runs/kallisto_quant/kallisto_results"
 # in_metadata_file <- "runs/merged_isa_metadata/merged_isa.tsv"
 # in_metadata_sample <- "Sample.Name.2"
diff --git a/workflows/kallisto_sleuth/kallisto_sleuth.R b/workflows/kallisto_sleuth/kallisto_sleuth.R
index e4c895eafb330000101e141b808463c7e786dbbf..688904d0b3d69b94b474587583d8030122c218f6 100644
--- a/workflows/kallisto_sleuth/kallisto_sleuth.R
+++ b/workflows/kallisto_sleuth/kallisto_sleuth.R
@@ -7,7 +7,7 @@
 #### CWL-independent tests
 ################################################
 
-# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq/"
+# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq_adrian/"
 # in_sleuth <- "runs/kallisto_collect/kallisto_sleuthObject.RData"
 # out_folder <- "runs/kallisto_sleuth"
 
diff --git a/workflows/shiny_prep/shiny_prep.R b/workflows/shiny_prep/shiny_prep.R
index c46afba5da52cf85ff3cdb17830a8b0b5da49945..07c44659bcacade29394ee895d9f9c38427e45bd 100644
--- a/workflows/shiny_prep/shiny_prep.R
+++ b/workflows/shiny_prep/shiny_prep.R
@@ -4,7 +4,7 @@
 #### CWL-independent tests
 ################################################
 
-# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq/"
+# arc_root <- "~/gitlab_dataplant/samplearc_rnaseq_adrian/"
 # out_folder <- "runs/shiny_prep"
 # in_kallisto_df <- "runs/kallisto_collect/kallisto_df.csv"