diff --git a/.cwl/README.md b/.cwl/README.md index c871e53701554c85298f7653a15b25b19062282b..41a62d0781782aa6192559d788c3dbcc500c32fe 100644 --- a/.cwl/README.md +++ b/.cwl/README.md @@ -24,25 +24,20 @@ Briefly, every data analysis step (`runs`) is described with a `run.cwl` documen ``` ```mermaid -%%{ init: {"flowchart": { "wrappingWidth": "10000" }}}%% - flowchart TD - -workflowcwl --o runcwl - +workflowcwl --- runcwl subgraph r["runs/fastqc/"] - runcwl@{ shape: doc, label: "run.cwl" } - runyml@{ shape: doc, label: "run.yml" } + runcwl(("run.cwl")) + runyml(("run.yml")) end - -i[input: DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz] --o runyml -r --> o[output: DB_097_CAMMD_CAGATC_L001_R1_001_fastqc.html] - +i[input: DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz] --- runyml +r ---> o[output: DB_097_CAMMD_CAGATC_L001_R1_001_fastqc.html] subgraph "workflows/fastqc" - workflowcwl@{ shape: doc, label: "workflow.cwl" } + workflowcwl(("workflow.cwl")) end ``` + ## Setup and dependencies Again, for details check the docs linked above.