From 5db51ec287c18c9004f17f565258faedba3349ba Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Tue, 18 Mar 2025 15:07:21 +0000
Subject: [PATCH] fix mermaid
---
.cwl/README.md | 19 +++++++------------
1 file changed, 7 insertions(+), 12 deletions(-)
diff --git a/.cwl/README.md b/.cwl/README.md
index c871e53..41a62d0 100644
--- a/.cwl/README.md
+++ b/.cwl/README.md
@@ -24,25 +24,20 @@ Briefly, every data analysis step (`runs`) is described with a `run.cwl` documen
```
```mermaid
-%%{ init: {"flowchart": { "wrappingWidth": "10000" }}}%%
-
flowchart TD
-
-workflowcwl --o runcwl
-
+workflowcwl --- runcwl
subgraph r["runs/fastqc/"]
- runcwl@{ shape: doc, label: "run.cwl" }
- runyml@{ shape: doc, label: "run.yml" }
+ runcwl(("run.cwl"))
+ runyml(("run.yml"))
end
-
-i[input: DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz] --o runyml
-r --> o[output: DB_097_CAMMD_CAGATC_L001_R1_001_fastqc.html]
-
+i[input: DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz] --- runyml
+r ---> o[output: DB_097_CAMMD_CAGATC_L001_R1_001_fastqc.html]
subgraph "workflows/fastqc"
- workflowcwl@{ shape: doc, label: "workflow.cwl" }
+ workflowcwl(("workflow.cwl"))
end
```
+
## Setup and dependencies
Again, for details check the docs linked above.
--
GitLab