diff --git a/README.md b/README.md index 60d41c9c64720ec2453e18f040219a8f853a6f27..a0b47600f691b2402d98bfee41e34da7a0c1b704 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,7 @@ The [Talinum Genome Draft](./studies/TalinumGenomeDraft) originates from <https: 2. [Publication](#publication) 3. Studies - [TalinumGenomeDraft](#study--talinumgenomedraft) - - [TalinumFacultativeCAM](#study--talinumfacultativecam) + - [TalinumSamples-STRI](#study--TalinumSamples-STRI) 4. Assays - [MassHunter_targets](#assay--masshunter_targets) - [GCqTOF_targets](#assay--gcqtof_targets) @@ -32,8 +32,8 @@ flowchart TD subgraph STUDY_TalinumGenomeDraft[Study:TalinumGenomeDraft] TalinumGenomeDraft[TalinumGenomeDraft] end - Facultative-CAM-in-Talinum-->STUDY_TalinumFacultativeCAM - subgraph STUDY_TalinumFacultativeCAM[Study:TalinumFacultativeCAM] + Facultative-CAM-in-Talinum-->STUDY_TalinumSamples-STRI + subgraph STUDY_TalinumSamples-STRI[Study:TalinumSamples-STRI] plant_material[plant_material] end subgraph ASSAY_MassHunter_targets[Assay:MassHunter_targets] @@ -62,7 +62,7 @@ classDef studyStyle fill:#62d4c1,color:#2d3e50,font-weight:bold; classDef assayStyle fill:#ffd34d,color:#2d3e50,font-weight:bold; classDef processStyle fill:#D46275,color:#2d3e50,font-weight:; class Facultative-CAM-in-Talinum investigationStyle; -class STUDY_TalinumGenomeDraft,STUDY_TalinumFacultativeCAM studyStyle; +class STUDY_TalinumGenomeDraft,STUDY_TalinumSamples-STRI studyStyle; class ASSAY_MassHunter_targets,ASSAY_RNASeq,ASSAY_GCqTOF_targets assayStyle; class TalinumGenomeDraft,plant_material,mh-quant-results,mh-quant-report,rna_extraction,illumina,metabolite_extraction,gas_chromatography,mass_spec processStyle; ``` @@ -73,7 +73,7 @@ class TalinumGenomeDraft,plant_material,mh-quant-results,mh-quant-report,rna_ext | --------- | ----------- | | Submission Date | July 07, 2015 | | Public Release Date | Nov 05, 2015 | -| Study identifiers | TalinumGenomeDraft , TalinumFacultativeCAM | +| Study identifiers | TalinumGenomeDraft , TalinumSamples-STRI | | Study Count | 2 | | Assay identifiers | MassHunter_targets , RNASeq , GCqTOF_targets | | Assay Count | 3 | @@ -103,7 +103,7 @@ class TalinumGenomeDraft,plant_material,mh-quant-results,mh-quant-report,rna_ext ### Annotation headers -## Study : *TalinumFacultativeCAM* +## Study : *TalinumSamples-STRI* ### Additional details @@ -150,7 +150,7 @@ class TalinumGenomeDraft,plant_material,mh-quant-results,mh-quant-report,rna_ext | Table Names | rna_extraction , illumina | | Sample Count | 6 | | Data File Count | 6 | -| Associated studies | TalinumFacultativeCAM | +| Associated studies | TalinumSamples-STRI | ### Annotation headers @@ -167,7 +167,7 @@ class TalinumGenomeDraft,plant_material,mh-quant-results,mh-quant-report,rna_ext | Table Names | metabolite_extraction , gas_chromatography , mass_spec | | Sample Count | 20 | | Data File Count | 20 | -| Associated studies | TalinumFacultativeCAM | +| Associated studies | TalinumSamples-STRI | ### Annotation headers diff --git a/studies/TalinumFacultativeCAM/isa.study.xlsx b/studies/TalinumFacultativeCAM/isa.study.xlsx deleted file mode 100644 index 0a83fd2d7f6d0487f700abb76eac92200cf11a71..0000000000000000000000000000000000000000 Binary files a/studies/TalinumFacultativeCAM/isa.study.xlsx and /dev/null differ diff --git a/studies/TalinumFacultativeCAM/README.md b/studies/TalinumSamples-STRI/README.md similarity index 100% rename from studies/TalinumFacultativeCAM/README.md rename to studies/TalinumSamples-STRI/README.md diff --git a/studies/TalinumSamples-STRI/isa.study.xlsx b/studies/TalinumSamples-STRI/isa.study.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..316a5f7bfdbe11b588e63c0bb0d3793e0ba85ddc Binary files /dev/null and b/studies/TalinumSamples-STRI/isa.study.xlsx differ diff --git a/studies/TalinumFacultativeCAM/protocols/.gitkeep b/studies/TalinumSamples-STRI/protocols/.gitkeep similarity index 100% rename from studies/TalinumFacultativeCAM/protocols/.gitkeep rename to studies/TalinumSamples-STRI/protocols/.gitkeep diff --git a/studies/TalinumFacultativeCAM/protocols/plant_material.md b/studies/TalinumSamples-STRI/protocols/plant_material.md similarity index 100% rename from studies/TalinumFacultativeCAM/protocols/plant_material.md rename to studies/TalinumSamples-STRI/protocols/plant_material.md diff --git a/studies/TalinumFacultativeCAM/resources/.gitkeep b/studies/TalinumSamples-STRI/resources/.gitkeep similarity index 100% rename from studies/TalinumFacultativeCAM/resources/.gitkeep rename to studies/TalinumSamples-STRI/resources/.gitkeep diff --git a/studies/TalinumFacultativeCAM/resources/DB_097 b/studies/TalinumSamples-STRI/resources/DB_097 similarity index 100% rename from studies/TalinumFacultativeCAM/resources/DB_097 rename to studies/TalinumSamples-STRI/resources/DB_097 diff --git a/studies/TalinumFacultativeCAM/resources/DB_099 b/studies/TalinumSamples-STRI/resources/DB_099 similarity index 100% rename from studies/TalinumFacultativeCAM/resources/DB_099 rename to studies/TalinumSamples-STRI/resources/DB_099 diff --git a/studies/TalinumFacultativeCAM/resources/DB_103 b/studies/TalinumSamples-STRI/resources/DB_103 similarity index 100% rename from studies/TalinumFacultativeCAM/resources/DB_103 rename to studies/TalinumSamples-STRI/resources/DB_103 diff --git a/studies/TalinumFacultativeCAM/resources/DB_161 b/studies/TalinumSamples-STRI/resources/DB_161 similarity index 100% rename from studies/TalinumFacultativeCAM/resources/DB_161 rename to studies/TalinumSamples-STRI/resources/DB_161 diff --git a/studies/TalinumFacultativeCAM/resources/DB_163 b/studies/TalinumSamples-STRI/resources/DB_163 similarity index 100% rename from studies/TalinumFacultativeCAM/resources/DB_163 rename to studies/TalinumSamples-STRI/resources/DB_163 diff --git a/studies/TalinumFacultativeCAM/resources/DB_165 b/studies/TalinumSamples-STRI/resources/DB_165 similarity index 100% rename from studies/TalinumFacultativeCAM/resources/DB_165 rename to studies/TalinumSamples-STRI/resources/DB_165