diff --git a/workflows/_dependencies/install_cwl.md b/workflows/_dependencies/install_cwl.md new file mode 100644 index 0000000000000000000000000000000000000000..d812962a3932a710221301d08205e47345bc95a2 --- /dev/null +++ b/workflows/_dependencies/install_cwl.md @@ -0,0 +1,13 @@ + +# CWL Installation (MacOS) + +Docs: https://www.commonwl.org/ +GitHub: https://github.com/common-workflow-language/cwltool + +## Install CWL via conda + +> requires conda installation, which is a whole different story. Good luck. + +```bash +conda install -c conda-forge cwltool +``` diff --git a/workflows/_dependencies/install_kallisto.md b/workflows/_dependencies/install_kallisto.md index af072add7c4d6bda80e017f83be41d2914342962..121b9f229d207352c3529e572286b3bd34b3f2f9 100644 --- a/workflows/_dependencies/install_kallisto.md +++ b/workflows/_dependencies/install_kallisto.md @@ -1,21 +1,13 @@ -# Kallisto +# Kallisto Installation -## Manual +- Docs: http://pachterlab.github.io/kallisto/manual.html +- GitHub: https://github.com/pachterlab/kallisto -http://pachterlab.github.io/kallisto/manual.html +## MacOS Installation via conda -## MacOS Installation +see: https://anaconda.org/bioconda/kallisto ```bash -ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)" -brew install kallisto -``` - -```bash -git clone https://github.com/pachterlab/kallisto.git -cd kallisto -mkdir build -cd build -cmake .. -DUSE_HDF5=ON +conda install -c bioconda kallisto ```