From 6dea0bff28c8e5a805af437a9dce09d1cbd72830 Mon Sep 17 00:00:00 2001
From: Dominik <dominik.brilhaus@hhu.de>
Date: Wed, 10 Aug 2022 18:03:34 +0200
Subject: [PATCH] installation notes

---
 workflows/_dependencies/install_cwl.md      | 13 +++++++++++++
 workflows/_dependencies/install_kallisto.md | 20 ++++++--------------
 2 files changed, 19 insertions(+), 14 deletions(-)
 create mode 100644 workflows/_dependencies/install_cwl.md

diff --git a/workflows/_dependencies/install_cwl.md b/workflows/_dependencies/install_cwl.md
new file mode 100644
index 0000000..d812962
--- /dev/null
+++ b/workflows/_dependencies/install_cwl.md
@@ -0,0 +1,13 @@
+
+# CWL Installation (MacOS)
+
+Docs: https://www.commonwl.org/
+GitHub: https://github.com/common-workflow-language/cwltool
+
+## Install CWL via conda
+
+> requires conda installation, which is a whole different story. Good luck.
+
+```bash
+conda install -c conda-forge cwltool
+```
diff --git a/workflows/_dependencies/install_kallisto.md b/workflows/_dependencies/install_kallisto.md
index af072ad..121b9f2 100644
--- a/workflows/_dependencies/install_kallisto.md
+++ b/workflows/_dependencies/install_kallisto.md
@@ -1,21 +1,13 @@
 
-# Kallisto
+# Kallisto Installation
 
-## Manual
+- Docs: http://pachterlab.github.io/kallisto/manual.html
+- GitHub: https://github.com/pachterlab/kallisto
 
-http://pachterlab.github.io/kallisto/manual.html
+## MacOS Installation via conda
 
-## MacOS Installation
+see: https://anaconda.org/bioconda/kallisto
 
 ```bash
-ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
-brew install kallisto
-```
-
-```bash
-git clone https://github.com/pachterlab/kallisto.git
-cd kallisto
-mkdir build
-cd build
-cmake  .. -DUSE_HDF5=ON
+conda install -c bioconda kallisto
 ```
-- 
GitLab