diff --git a/workflows/deseq2/Dockerfile b/workflows/deseq2/Dockerfile index 277379d367a919713bac7a7446616b250769acab..fb3edf185ab1df36a475ff87f2507ecb1e537a68 100644 --- a/workflows/deseq2/Dockerfile +++ b/workflows/deseq2/Dockerfile @@ -1,7 +1,5 @@ -FROM quay.io/biocontainers/bioconductor-deseq2:1.42.0--r43hf17093f_2 - -# Since our base image is an R docker base we will use BiocManager install +FROM rstudio/r-base:4.3-jammy RUN apt-get update && \ - R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org/');BiocManager::install('tximport')" && \ + R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org/'); BiocManager::install('DESeq2'); BiocManager::install('tximport'); BiocManager::install('rhdf5'); \\" && \ apt-get clean -y \ No newline at end of file