diff --git a/workflows/deseq2/deseq2.R b/workflows/deseq2/deseq2.R index 88ec8ee0f98fcd29d3bffd4ee3772dfacbc2f4d5..be32d9c9c5d4428172b924a5ad4c8c473a2fe796 100644 --- a/workflows/deseq2/deseq2.R +++ b/workflows/deseq2/deseq2.R @@ -8,12 +8,12 @@ library("rhdf5") library("ggplot2") library("readxl") -## In-and-out +# ## Tests -inKallistoResults <- "../../runs/kallisto/kallisto_results" -inMetadataFile <- "../../runs/isaSampleToRawDataSeq-run/rnaseq-samples.xlsx" -inMetadataSample <- "Input [Source Name]" -inMetadataFactorList <- list("Factor [Photosynthesis mode]") +# inKallistoResults <- "../../runs/kallisto/kallisto_results" +# inMetadataFile <- "../../runs/isaSampleToRawDataSeq-run/rnaseq-samples.xlsx" +# inMetadataSample <- "Input [Source Name]" +# inMetadataFactorList <- list("Factor [Photosynthesis mode]") ### Read arguments from CLI