diff --git a/workflows/deseq2/README.md b/workflows/deseq2/README.md index 03944ea1446b8c7a58ed5a530e9a238d10e68c6a..673fb4dc63ef924c2e57283cfad6a7d09eed71cd 100644 --- a/workflows/deseq2/README.md +++ b/workflows/deseq2/README.md @@ -10,12 +10,12 @@ Workflow used for **differential gene expression analysis** - https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#kallisto - -## Run pure script +## Run pure script (to test) ```bash RScript deseq2.R "../../runs/kallisto/kallisto_results" "../../runs/merged_isa_metadata/out/merged_isa.tsv" "Source.Name" "Factor..Photosynthesis.mode." ``` -## Run CWL +## Run CWL-wrapped script +see [runs/deseq2-run](../../runs/deseq2-run) \ No newline at end of file