From 7c076ffe65674df3af11ed4b8ea5d9b0ee4aba4c Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Tue, 5 Nov 2024 12:21:58 +0100
Subject: [PATCH] notes

---
 workflows/deseq2/README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/workflows/deseq2/README.md b/workflows/deseq2/README.md
index 03944ea..673fb4d 100644
--- a/workflows/deseq2/README.md
+++ b/workflows/deseq2/README.md
@@ -10,12 +10,12 @@ Workflow used for **differential gene expression analysis**
 
 - https://bioconductor.org/packages/release/bioc/vignettes/tximport/inst/doc/tximport.html#kallisto
 
-
-## Run pure script
+## Run pure script (to test)
 
 ```bash
 RScript deseq2.R "../../runs/kallisto/kallisto_results" "../../runs/merged_isa_metadata/out/merged_isa.tsv" "Source.Name" "Factor..Photosynthesis.mode."
 ```
 
-## Run CWL
+## Run CWL-wrapped script
 
+see [runs/deseq2-run](../../runs/deseq2-run)
\ No newline at end of file
-- 
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