From b300e364127ce0cc51801eefa9f970bfdea7ffe4 Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Thu, 2 Nov 2023 14:23:45 +0000
Subject: [PATCH] Update README.md
---
README.md | 136 +++++++++++++++++++++++++++---------------------------
1 file changed, 68 insertions(+), 68 deletions(-)
diff --git a/README.md b/README.md
index 03e84e3..f7d0a51 100644
--- a/README.md
+++ b/README.md
@@ -25,82 +25,82 @@ style assays/GCqTOF_targets fill:#ffc000
subgraph studies/TalinumFacultativeCAM
- DB_097 --[plant_material.md]--> CAM_01
- DB_099 --[plant_material.md]--> CAM_02
- DB_103 --[plant_material.md]--> CAM_03
- DB_161 --[plant_material.md]--> reC3_01
- DB_163 --[plant_material.md]--> reC3_02
- DB_165 --[plant_material.md]--> reC3_03
+ DB_097 --plant_material.md--> CAM_01
+ DB_099 --plant_material.md--> CAM_02
+ DB_103 --plant_material.md--> CAM_03
+ DB_161 --plant_material.md--> reC3_01
+ DB_163 --plant_material.md--> reC3_02
+ DB_165 --plant_material.md--> reC3_03
end
+
subgraph assays/Talinum_RNASeq_minimal
- CAM_01 --[rna_extraction.md]--> CAM_01_ext
- CAM_02 --[rna_extraction.md]--> CAM_02_ext
- CAM_03 --[rna_extraction.md]--> CAM_03_ext
- reC3_01 --[rna_extraction.md]--> reC3_01_ext
- reC3_02 --[rna_extraction.md]--> reC3_02_ext
- reC3_03 --[rna_extraction.md]--> reC3_03_ext
-
- CAM_01_ext --[illumina.md]--> DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz
- CAM_02_ext --[illumina.md]--> DB_099_CAMMD_CTTGTA_L001_R1_001.fastq.gz
- CAM_03_ext --[illumina.md]--> DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz
- reC3_01_ext --[illumina.md]--> DB_161_reC3MD_GTCCGC_L001_R1_001.fastq.gz
- reC3_02_ext --[illumina.md]--> DB_163_reC3MD_GTGAAA_L001_R1_001.fastq.gz
- reC3_03_ext --[illumina.md]--> DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz
+ CAM_01 --rna_extraction.md--> CAM_01_ext
+ CAM_02 --rna_extraction.md--> CAM_02_ext
+ CAM_03 --rna_extraction.md--> CAM_03_ext
+ reC3_01 --rna_extraction.md--> reC3_01_ext
+ reC3_02 --rna_extraction.md--> reC3_02_ext
+ reC3_03 --rna_extraction.md--> reC3_03_ext
+
+ CAM_01_ext --illumina.md--> DB_097_CAMMD_CAGATC_L001_R1_001.fastq.gz
+ CAM_02_ext --illumina.md--> DB_099_CAMMD_CTTGTA_L001_R1_001.fastq.gz
+ CAM_03_ext --illumina.md--> DB_103_CAMMD_AGTCAA_L001_R1_001.fastq.gz
+ reC3_01_ext --illumina.md--> DB_161_reC3MD_GTCCGC_L001_R1_001.fastq.gz
+ reC3_02_ext --illumina.md--> DB_163_reC3MD_GTGAAA_L001_R1_001.fastq.gz
+ reC3_03_ext --illumina.md--> DB_165_re-C3MD_GTGAAA_L002_R1_001.fastq.gz
end
subgraph assays/GCqTOF_targets
- CAM_01 --[metabolite_extraction.md]--> DB23
- CAM_02 --[metabolite_extraction.md]--> DB24
- CAM_03 --[metabolite_extraction.md]--> DB26
- reC3_01 --[metabolite_extraction.md]--> DB39
- reC3_02 --[metabolite_extraction.md]--> DB40
- reC3_03 --[metabolite_extraction.md]--> DB41
-
- Std.Mix5µM --[gas_chromatography.md]--> 150112_03
- Std.Mix5µM --[gas_chromatography.md]--> 150112_04
- blank1 --[gas_chromatography.md]--> 150112_15
- blank1 --[gas_chromatography.md]--> 150112_16
- DB23 --[gas_chromatography.md]--> 150112_55
- DB23 --[gas_chromatography.md]--> 150112_56
- DB24 --[gas_chromatography.md]--> 150112_61
- DB24 --[gas_chromatography.md]--> 150112_62
- DB26 --[gas_chromatography.md]--> 150112_65
- DB26 --[gas_chromatography.md]--> 150112_66
- Std.Mix5µM --[gas_chromatography.md]--> 150115_03
- Std.Mix5µM --[gas_chromatography.md]--> 150115_04
- DB39 --[gas_chromatography.md]--> 150115_11
- DB39 --[gas_chromatography.md]--> 150115_12
- DB40 --[gas_chromatography.md]--> 150115_13
- DB40 --[gas_chromatography.md]--> 150115_14
- DB41 --[gas_chromatography.md]--> 150115_15
- DB41 --[gas_chromatography.md]--> 150115_16
- blank2 --[gas_chromatography.md]--> 150115_25
- blank2 --[gas_chromatography.md]--> 150115_26
-
- 150112_03 --[mass_spec.md]--> 150112_03.D
- 150112_04 --[mass_spec.md]--> 150112_04.D
- 150112_15 --[mass_spec.md]--> 150112_15.D
- 150112_16 --[mass_spec.md]--> 150112_16.D
- 150112_55 --[mass_spec.md]--> 150112_55.D
- 150112_56 --[mass_spec.md]--> 150112_56.D
- 150112_61 --[mass_spec.md]--> 150112_61.D
- 150112_62 --[mass_spec.md]--> 150112_62.D
- 150112_65 --[mass_spec.md]--> 150112_65.D
- 150112_66 --[mass_spec.md]--> 150112_66.D
- 150115_03 --[mass_spec.md]--> 150115_03.D
- 150115_04 --[mass_spec.md]--> 150115_04.D
- 150115_11 --[mass_spec.md]--> 150115_11.D
- 150115_12 --[mass_spec.md]--> 150115_12.D
- 150115_13 --[mass_spec.md]--> 150115_13.D
- 150115_14 --[mass_spec.md]--> 150115_14.D
- 150115_15 --[mass_spec.md]--> 150115_15.D
- 150115_16 --[mass_spec.md]--> 150115_16.D
- 150115_25 --[mass_spec.md]--> 150115_25.D
- 150115_26 --[mass_spec.md]--> 150115_26.D
+ CAM_01 --metabolite_extraction.md--> DB23
+ CAM_02 --metabolite_extraction.md--> DB24
+ CAM_03 --metabolite_extraction.md--> DB26
+ reC3_01 --metabolite_extraction.md--> DB39
+ reC3_02 --metabolite_extraction.md--> DB40
+ reC3_03 --metabolite_extraction.md--> DB41
+
+ Std.Mix5µM --gas_chromatography.md--> 150112_03
+ Std.Mix5µM --gas_chromatography.md--> 150112_04
+ blank1 --gas_chromatography.md--> 150112_15
+ blank1 --gas_chromatography.md--> 150112_16
+ DB23 --gas_chromatography.md--> 150112_55
+ DB23 --gas_chromatography.md--> 150112_56
+ DB24 --gas_chromatography.md--> 150112_61
+ DB24 --gas_chromatography.md--> 150112_62
+ DB26 --gas_chromatography.md--> 150112_65
+ DB26 --gas_chromatography.md--> 150112_66
+ Std.Mix5µM --gas_chromatography.md--> 150115_03
+ Std.Mix5µM --gas_chromatography.md--> 150115_04
+ DB39 --gas_chromatography.md--> 150115_11
+ DB39 --gas_chromatography.md--> 150115_12
+ DB40 --gas_chromatography.md--> 150115_13
+ DB40 --gas_chromatography.md--> 150115_14
+ DB41 --gas_chromatography.md--> 150115_15
+ DB41 --gas_chromatography.md--> 150115_16
+ blank2 --gas_chromatography.md--> 150115_25
+ blank2 --gas_chromatography.md--> 150115_26
+
+ 150112_03 --mass_spec.md--> 150112_03.D
+ 150112_04 --mass_spec.md--> 150112_04.D
+ 150112_15 --mass_spec.md--> 150112_15.D
+ 150112_16 --mass_spec.md--> 150112_16.D
+ 150112_55 --mass_spec.md--> 150112_55.D
+ 150112_56 --mass_spec.md--> 150112_56.D
+ 150112_61 --mass_spec.md--> 150112_61.D
+ 150112_62 --mass_spec.md--> 150112_62.D
+ 150112_65 --mass_spec.md--> 150112_65.D
+ 150112_66 --mass_spec.md--> 150112_66.D
+ 150115_03 --mass_spec.md--> 150115_03.D
+ 150115_04 --mass_spec.md--> 150115_04.D
+ 150115_11 --mass_spec.md--> 150115_11.D
+ 150115_12 --mass_spec.md--> 150115_12.D
+ 150115_13 --mass_spec.md--> 150115_13.D
+ 150115_14 --mass_spec.md--> 150115_14.D
+ 150115_15 --mass_spec.md--> 150115_15.D
+ 150115_16 --mass_spec.md--> 150115_16.D
+ 150115_25 --mass_spec.md--> 150115_25.D
+ 150115_26 --mass_spec.md--> 150115_26.D
end
-
```
--
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