diff --git a/workflows/deseq2/workflow.cwl b/workflows/deseq2/workflow.cwl index 84cb8823d74ef4fecd4941d569aaaded0029c130..993371903c5258fdc98b03740978714854530c22 100644 --- a/workflows/deseq2/workflow.cwl +++ b/workflows/deseq2/workflow.cwl @@ -1,5 +1,14 @@ #!/usr/bin/env cwl-runner +doc: | + DESeq2 example workflow + This workflow runs DESeq2 on the output of the kallisto workflow + and the metadata file. + It runs an R script, deseq2.R, which ideally should be split into three sub scripts and accordingly three workflow steps + 1. Read kallsito data + 2. Prep / run deseq2 + 3. Plot results + cwlVersion: v1.2 class: CommandLineTool hints: