diff --git a/docker-dependencies/arc_specification@2.0.0-draft/badge.svg b/docker-dependencies/arc_specification@2.0.0-draft/badge.svg new file mode 100644 index 0000000000000000000000000000000000000000..46b58da155ef52407ae2d82d9326e73665344065 --- /dev/null +++ b/docker-dependencies/arc_specification@2.0.0-draft/badge.svg @@ -0,0 +1,23 @@ +<?xml version="1.0" encoding="UTF-8"?> +<svg xmlns="http://www.w3.org/2000/svg" width="300" height="20"> + <linearGradient id="b" x2="0" y2="100%"> + <stop offset="0" stop-color="#bbb" stop-opacity=".1"/> + <stop offset="1" stop-opacity=".1"/> + </linearGradient> + <mask id="1"> + <rect width="300" height="20" rx="3" fill="#fff"/> + </mask> + <g mask="url(#1)"> + <path fill="#555" d="M0 0h192v20H0z"/> + <path fill="#E05D44" d="M192 0h108v20H192z"/> + <path fill="url(#b)" d="M0 0h300v20H0z"/> + </g> + <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> + <text x="97" y="15" fill="#010101" fill-opacity=".3">arc_specification@2.0.0-draft</text> + <text x="96" y="14">arc_specification@2.0.0-draft</text> + </g> + <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> + <text x="247" y="15" fill="#010101" fill-opacity=".3">1 Critical Errors</text> + <text x="246" y="14">1 Critical Errors</text> + </g> +</svg> diff --git a/docker-dependencies/arc_specification@2.0.0-draft/validation_report.xml b/docker-dependencies/arc_specification@2.0.0-draft/validation_report.xml new file mode 100644 index 0000000000000000000000000000000000000000..5f2478b58fbb1651a0690067eca0e7e285d541f5 --- /dev/null +++ b/docker-dependencies/arc_specification@2.0.0-draft/validation_report.xml @@ -0,0 +1 @@ +<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="arc-validate"><testcase name="[ Critical; Arc contains all files linked in studies ]" time="0.035"><failure message="The value 'assays/Talinum_RNASeq_minimal/isa.assay.xlsx' does not exist" /></testcase><testcase name="[ Critical; Arc contains study in studies directory ]" time="0.087" /><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in assays ]" time="0.087" /><testcase name="[ Critical; Arc contains assay in assay directory ]" time="0.078" /><testcase name="[ Critical; Arc is free of falesly parsed process graph headers in studies ]" time="0.063" /><testcase name="[ Critical; Arc contains workflow in workflow directory ]" time="0.039" /><testcase name="[ Critical; Arc contains investigation file ]" time="0.022" /><testcase name="[ Critical; Arc contains Assays Directory ]" time="0.011" /><testcase name="[ Critical; Arc contains Workflows Directory ]" time="0.011" /><testcase name="[ Critical; Arc contains Studies Directory ]" time="0.007" /><testcase name="[ Critical; Arc contains Runs Directory ]" time="0.007" /><testcase name="[ Critical; Arc contains all needed Investigation Metadata fields ]" time="0.007" /><testcase name="[ Critical; Arc contains all needed Study Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains all needed Assay Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains Investigation optional Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains Study optional Metadata fields ]" time="0.002" /><testcase name="[ Critical; Arc contains all files linked in investigation ]" time="0.000" /></testsuite></testsuites> \ No newline at end of file diff --git a/docker-dependencies/arc_specification@2.0.0-draft/validation_summary.json b/docker-dependencies/arc_specification@2.0.0-draft/validation_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..b0a4969bfacbee64fe6cf777e8098b74b329a5c9 --- /dev/null +++ b/docker-dependencies/arc_specification@2.0.0-draft/validation_summary.json @@ -0,0 +1 @@ +{"Critical":{"HasFailures":true,"Total":17,"Passed":16,"Failed":1,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"arc_specification","Version":"2.0.0-draft","Summary":"Validate whether an ARC conforms to Specification V2.0.0-draft","Description":"Validate whether an ARC conforms to Specification V2.0.0-draft. See the relevant spec at https://github.com/nfdi4plants/ARC-specification/blob/v2.0.0/ARC%20specification.md"}} \ No newline at end of file diff --git a/docker-dependencies/invenio@2.1.0/badge.svg b/docker-dependencies/invenio@2.1.0/badge.svg new file mode 100644 index 0000000000000000000000000000000000000000..28088d3b03712d727b88bddf2c37a8fd2dc2dbb2 --- /dev/null +++ b/docker-dependencies/invenio@2.1.0/badge.svg @@ -0,0 +1,23 @@ +<?xml version="1.0" encoding="UTF-8"?> +<svg xmlns="http://www.w3.org/2000/svg" width="137" height="20"> + <linearGradient id="b" x2="0" y2="100%"> + <stop offset="0" stop-color="#bbb" stop-opacity=".1"/> + <stop offset="1" stop-opacity=".1"/> + </linearGradient> + <mask id="1"> + <rect width="137" height="20" rx="3" fill="#fff"/> + </mask> + <g mask="url(#1)"> + <path fill="#555" d="M0 0h94v20H0z"/> + <path fill="#4C1" d="M94 0h43v20H94z"/> + <path fill="url(#b)" d="M0 0h137v20H0z"/> + </g> + <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> + <text x="48" y="15" fill="#010101" fill-opacity=".3">invenio@2.1.0</text> + <text x="47" y="14">invenio@2.1.0</text> + </g> + <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> + <text x="116.5" y="15" fill="#010101" fill-opacity=".3">10/10</text> + <text x="115.5" y="14">10/10</text> + </g> +</svg> diff --git a/docker-dependencies/invenio@2.1.0/validation_report.xml b/docker-dependencies/invenio@2.1.0/validation_report.xml new file mode 100644 index 0000000000000000000000000000000000000000..2166caaf78ba855ae92e77245e7f20c1ccb6ff91 --- /dev/null +++ b/docker-dependencies/invenio@2.1.0/validation_report.xml @@ -0,0 +1 @@ +<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ Critical; INVESTIGATION; Investigation Title ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Description ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Last Name is not empty ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation exists ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Affiliation is not empty ]" time="0.004" /><testcase name="[ Critical; INVESTIGATION; Investigation Person First Name is not empty ]" time="0.003" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email exists ]" time="0.000" /><testcase name="[ Critical; INVESTIGATION; Investigation Person Email ]" time="0.000" /></testsuite></testsuites> \ No newline at end of file diff --git a/docker-dependencies/invenio@2.1.0/validation_summary.json b/docker-dependencies/invenio@2.1.0/validation_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..9f695468e246b4464ae667778eac68664ff576b1 --- /dev/null +++ b/docker-dependencies/invenio@2.1.0/validation_summary.json @@ -0,0 +1 @@ +{"Critical":{"HasFailures":false,"Total":10,"Passed":10,"Failed":0,"Errored":0},"NonCritical":{"HasFailures":false,"Total":0,"Passed":0,"Failed":0,"Errored":0},"ValidationPackage":{"Name":"invenio","Version":"2.1.0","Summary":"Validates if the ARC contains the necessary metadata to be publishable via Invenio.","Description":"Validates if the ARC contains the necessary metadata to be publishable via Invenio.\nThe following metadata is required:\n- Investigation has title and description\n- All persons in Investigation Contacts must have a name, last name, affiliation and valid email\n"}} \ No newline at end of file diff --git a/docker-dependencies/plant-growth@1.0.0/badge.svg b/docker-dependencies/plant-growth@1.0.0/badge.svg new file mode 100644 index 0000000000000000000000000000000000000000..36196e709b82f683d437999a4a4f249af5271767 --- /dev/null +++ b/docker-dependencies/plant-growth@1.0.0/badge.svg @@ -0,0 +1,23 @@ +<?xml version="1.0" encoding="UTF-8"?> +<svg xmlns="http://www.w3.org/2000/svg" width="121" height="20"> + <linearGradient id="b" x2="0" y2="100%"> + <stop offset="0" stop-color="#bbb" stop-opacity=".1"/> + <stop offset="1" stop-opacity=".1"/> + </linearGradient> + <mask id="1"> + <rect width="121" height="20" rx="3" fill="#fff"/> + </mask> + <g mask="url(#1)"> + <path fill="#555" d="M0 0h85v20H0z"/> + <path fill="#4C1" d="M85 0h36v20H85z"/> + <path fill="url(#b)" d="M0 0h121v20H0z"/> + </g> + <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> + <text x="43.5" y="15" fill="#010101" fill-opacity=".3">plant-growth</text> + <text x="42.5" y="14">plant-growth</text> + </g> + <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> + <text x="104" y="15" fill="#010101" fill-opacity=".3">8/17</text> + <text x="103" y="14">8/17</text> + </g> +</svg> diff --git a/docker-dependencies/plant-growth@1.0.0/validation_report.xml b/docker-dependencies/plant-growth@1.0.0/validation_report.xml new file mode 100644 index 0000000000000000000000000000000000000000..a8e73f6633000a60f3b8225d806cba33a03de663 --- /dev/null +++ b/docker-dependencies/plant-growth@1.0.0/validation_report.xml @@ -0,0 +1 @@ +<?xml version="1.0" encoding="utf-8"?><testsuites><testsuite name="fsi"><testcase name="[ NonCritical; cases; plant_material: study type ]" time="0.003"><failure message="table contains no study type header" /></testcase><testcase name="[ NonCritical; cases; plant_material: Reference Time Point ]" time="0.003"><failure message="table contains no Reference Time Point header" /></testcase><testcase name="[ NonCritical; cases; plant_material: genotype ]" time="0.002"><failure message="table contains no genotype header" /></testcase><testcase name="[ NonCritical; cases; plant_material: growth plot design ]" time="0.002"><failure message="table contains no growth plot design header" /></testcase><testcase name="[ NonCritical; cases; plant_material: plant growth medium exposure ]" time="0.002"><failure message="table contains no plant growth medium exposure header" /></testcase><testcase name="[ NonCritical; cases; plant_material: humidity night ]" time="0.002"><failure message="table contains no humidity night header" /></testcase><testcase name="[ NonCritical; cases; plant_material: plant nutrient exposure ]" time="0.002"><failure message="table contains no plant nutrient exposure header" /></testcase><testcase name="[ NonCritical; cases; plant_material: abiotic plant exposure ]" time="0.002"><failure message="table contains no abiotic plant exposure header" /></testcase><testcase name="[ NonCritical; cases; plant_material: biotic plant exposure ]" time="0.000"><failure message="table contains no biotic plant exposure header" /></testcase><testcase name="[ Critical; cases; plant growth table ]" time="0.031" /><testcase name="[ Critical; cases; plant_material: organism ]" time="0.002" /><testcase name="[ Critical; cases; plant_material: growth day length ]" time="0.002" /><testcase name="[ Critical; cases; plant_material: light intensity exposure ]" time="0.002" /><testcase name="[ Critical; cases; plant_material: humidity day ]" time="0.002" /><testcase name="[ Critical; cases; plant_material: temperature day ]" time="0.002" /><testcase name="[ Critical; cases; plant_material: temperature night ]" time="0.002" /><testcase name="[ Critical; cases; plant_material: watering exposure ]" time="0.002" /></testsuite></testsuites> \ No newline at end of file diff --git a/docker-dependencies/plant-growth@1.0.0/validation_summary.json b/docker-dependencies/plant-growth@1.0.0/validation_summary.json new file mode 100644 index 0000000000000000000000000000000000000000..0ffb0466f7f9134ae1e79acbacddc31962254341 --- /dev/null +++ b/docker-dependencies/plant-growth@1.0.0/validation_summary.json @@ -0,0 +1 @@ +{"Critical":{"HasFailures":false,"Total":8,"Passed":8,"Failed":0,"Errored":0},"NonCritical":{"HasFailures":true,"Total":9,"Passed":0,"Failed":9,"Errored":0},"ValidationPackage":{"Name":"plant-growth","Version":"1.0.0","Summary":"Validates if the ARC contains the necessary metadata to describe conditions for plant growth.","Description":"Validates if the ARC contains an annotation table with protocol type \u0022Plant Growth Protocol\u0022 and if it exists, whether it contains the following fields:\n\n Critical fields:\n - organism (OBI:0100026)\n - growth day length (DPBO:0000041)\n - light intensity exposure (PECO:0007224) \n - temperature day (DPBO:0000007)\n - temperature night (DPBO:0000008) \n\n Non critical fields:\n - genotype (EFO:0000513)\n - study type (PECO:0007231)\n - Reference Time Point (NCIT:C82576)\n - growth plot design (DPBO:0000001)\n - plant growth medium exposure (PECO:0007147)\n - humidity day (DPBO:0000005)\n - humidity night (DPBO:0000006)\n - plant nutrient exposure (PECO:0007241)\n - abiotic plant exposure (PECO:0007191)\n - biotic plant exposure (PECO:0007357)\n - watering exposure (PECO:0007383)\n"}} \ No newline at end of file