diff --git a/runs/kallisto_collect/kallisto_collect.yml b/runs/kallisto_collect/run.yml
similarity index 100%
rename from runs/kallisto_collect/kallisto_collect.yml
rename to runs/kallisto_collect/run.yml
diff --git a/runs/kallisto_index/kallisto_index.yml b/runs/kallisto_index/run.yml
similarity index 100%
rename from runs/kallisto_index/kallisto_index.yml
rename to runs/kallisto_index/run.yml
diff --git a/runs/kallisto_quant/kallisto_quant.yml b/runs/kallisto_quant/run.yml
similarity index 100%
rename from runs/kallisto_quant/kallisto_quant.yml
rename to runs/kallisto_quant/run.yml
diff --git a/runs/kallisto_sleuth/kallisto_sleuth.yml b/runs/kallisto_sleuth/run.yml
similarity index 100%
rename from runs/kallisto_sleuth/kallisto_sleuth.yml
rename to runs/kallisto_sleuth/run.yml
diff --git a/runs/merged_isa_metadata/merge_isa_metadata.yml b/runs/merged_isa_metadata/run.yml
similarity index 100%
rename from runs/merged_isa_metadata/merge_isa_metadata.yml
rename to runs/merged_isa_metadata/run.yml
diff --git a/runs/shiny_prep/shiny_prep.yml b/runs/shiny_prep/run.yml
similarity index 100%
rename from runs/shiny_prep/shiny_prep.yml
rename to runs/shiny_prep/run.yml