From be3024307de8401d3db5637b5caccae00cfd5552 Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Fri, 21 Mar 2025 11:02:23 +0100
Subject: [PATCH] add author to all run.cwl

---
 runs/deseq2/run.cwl                | 13 +++++++++++++
 runs/fastqc/run.cwl                | 15 ++++++++++++++-
 runs/isaSampleToRawDataSeq/run.cwl | 15 ++++++++++++++-
 runs/kallisto/run.cwl              | 13 +++++++++++++
 runs/shiny/run.cwl                 | 13 +++++++++++++
 runs/sleuth/run.cwl                | 14 ++++++++++++++
 6 files changed, 81 insertions(+), 2 deletions(-)

diff --git a/runs/deseq2/run.cwl b/runs/deseq2/run.cwl
index 849cd98..e0fdbf4 100644
--- a/runs/deseq2/run.cwl
+++ b/runs/deseq2/run.cwl
@@ -22,3 +22,16 @@ outputs:
   output: 
     type: File[]
     outputSource: deseq2/output
+
+$namespaces:
+  s: https://schema.org/
+  edam: http://edamontology.org/
+
+$schemas:
+  - https://schema.org/version/latest/schemaorg-current-https.rdf
+  - http://edamontology.org/EDAM_1.18.owl
+
+s:author:
+  - class: s:Person
+    s:name: Dominik Brilhaus
+    s:identifier: https://orcid.org/0000-0001-9021-3197
\ No newline at end of file
diff --git a/runs/fastqc/run.cwl b/runs/fastqc/run.cwl
index b049a5f..fb4552b 100644
--- a/runs/fastqc/run.cwl
+++ b/runs/fastqc/run.cwl
@@ -21,4 +21,17 @@ steps:
 outputs:
   fastqc_outdir:
     type: Directory
-    outputSource: fastqc/fastqc_outdir
\ No newline at end of file
+    outputSource: fastqc/fastqc_outdir
+
+$namespaces:
+  s: https://schema.org/
+  edam: http://edamontology.org/
+
+$schemas:
+  - https://schema.org/version/latest/schemaorg-current-https.rdf
+  - http://edamontology.org/EDAM_1.18.owl
+
+s:author:
+  - class: s:Person
+    s:name: Dominik Brilhaus
+    s:identifier: https://orcid.org/0000-0001-9021-3197
\ No newline at end of file
diff --git a/runs/isaSampleToRawDataSeq/run.cwl b/runs/isaSampleToRawDataSeq/run.cwl
index aca29e7..803f531 100644
--- a/runs/isaSampleToRawDataSeq/run.cwl
+++ b/runs/isaSampleToRawDataSeq/run.cwl
@@ -25,4 +25,17 @@ outputs:
     outputSource: isaSampleToRawDataSeq/sampleseqCsv
   sampleseqXlsx:
     type: File
-    outputSource: isaSampleToRawDataSeq/sampleseqXlsx
\ No newline at end of file
+    outputSource: isaSampleToRawDataSeq/sampleseqXlsx
+
+$namespaces:
+  s: https://schema.org/
+  edam: http://edamontology.org/
+
+$schemas:
+  - https://schema.org/version/latest/schemaorg-current-https.rdf
+  - http://edamontology.org/EDAM_1.18.owl
+
+s:author:
+  - class: s:Person
+    s:name: Dominik Brilhaus
+    s:identifier: https://orcid.org/0000-0001-9021-3197
\ No newline at end of file
diff --git a/runs/kallisto/run.cwl b/runs/kallisto/run.cwl
index d702ed4..f06fae2 100644
--- a/runs/kallisto/run.cwl
+++ b/runs/kallisto/run.cwl
@@ -41,3 +41,16 @@ outputs:
   kallistoOutDir:
     type: Directory
     outputSource: kallisto/kallistoOutDir
+
+$namespaces:
+  s: https://schema.org/
+  edam: http://edamontology.org/
+
+$schemas:
+  - https://schema.org/version/latest/schemaorg-current-https.rdf
+  - http://edamontology.org/EDAM_1.18.owl
+
+s:author:
+  - class: s:Person
+    s:name: Dominik Brilhaus
+    s:identifier: https://orcid.org/0000-0001-9021-3197
\ No newline at end of file
diff --git a/runs/shiny/run.cwl b/runs/shiny/run.cwl
index 71435f9..532fa88 100644
--- a/runs/shiny/run.cwl
+++ b/runs/shiny/run.cwl
@@ -16,3 +16,16 @@ steps:
     out: []
 
 outputs: []
+
+$namespaces:
+  s: https://schema.org/
+  edam: http://edamontology.org/
+
+$schemas:
+  - https://schema.org/version/latest/schemaorg-current-https.rdf
+  - http://edamontology.org/EDAM_1.18.owl
+
+s:author:
+  - class: s:Person
+    s:name: Dominik Brilhaus
+    s:identifier: https://orcid.org/0000-0001-9021-3197
diff --git a/runs/sleuth/run.cwl b/runs/sleuth/run.cwl
index e00ce51..7884d8d 100644
--- a/runs/sleuth/run.cwl
+++ b/runs/sleuth/run.cwl
@@ -27,3 +27,17 @@ outputs:
  outdir:
     type: Directory[]
     outputSource: sleuth/outdir
+
+
+$namespaces:
+  s: https://schema.org/
+  edam: http://edamontology.org/
+
+$schemas:
+  - https://schema.org/version/latest/schemaorg-current-https.rdf
+  - http://edamontology.org/EDAM_1.18.owl
+
+s:author:
+  - class: s:Person
+    s:name: Dominik Brilhaus
+    s:identifier: https://orcid.org/0000-0001-9021-3197
\ No newline at end of file
-- 
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