From c54d4a87514e25286feed4b12b60e55271e9da52 Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Fri, 2 Aug 2024 14:28:00 +0200
Subject: [PATCH] hard code file name slicing works
---
workflows/kallisto/kallisto-workflow.cwl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflows/kallisto/kallisto-workflow.cwl b/workflows/kallisto/kallisto-workflow.cwl
index c0e074e..0cf46eb 100644
--- a/workflows/kallisto/kallisto-workflow.cwl
+++ b/workflows/kallisto/kallisto-workflow.cwl
@@ -39,7 +39,7 @@ steps:
InputReads: InputReadsMultipleSamples
QuantOutfolder:
source: InputReadsMultipleSamples
- valueFrom: $(self[0].nameroot)
+ valueFrom: $(self[0].nameroot.substring(0,6))
Index: index/index
isSingle: isSingle
FragmentLength: FragmentLength
--
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