From c9a79799778e7314e54efa2a6001561a2021555b Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Mon, 5 Aug 2024 12:35:52 +0200
Subject: [PATCH] change kallisto container to v 0.51
---
workflows/kallisto/kallisto-help.cwl | 6 +++---
workflows/kallisto/kallisto-index.cwl | 6 +++---
workflows/kallisto/kallisto-quant.cwl | 6 +++---
3 files changed, 9 insertions(+), 9 deletions(-)
diff --git a/workflows/kallisto/kallisto-help.cwl b/workflows/kallisto/kallisto-help.cwl
index c0dc2d2..dd42fae 100644
--- a/workflows/kallisto/kallisto-help.cwl
+++ b/workflows/kallisto/kallisto-help.cwl
@@ -4,15 +4,15 @@ class: CommandLineTool
hints:
DockerRequirement:
- dockerPull: quay.io/biocontainers/kallisto:0.46.2--h4f7b962_1
+ dockerPull: quay.io/biocontainers/kallisto:0.51.0--h6de1650_0
SoftwareRequirement:
packages:
kallisto:
- version: [ "0.46.0" ]
+ version: [ "0.51.0" ]
specs: [ https://identifiers.org/biotools/kallisto ]
inputs: []
-baseCommand: [kallisto, index]
+baseCommand: [kallisto]
outputs: []
\ No newline at end of file
diff --git a/workflows/kallisto/kallisto-index.cwl b/workflows/kallisto/kallisto-index.cwl
index 8813559..d37d620 100644
--- a/workflows/kallisto/kallisto-index.cwl
+++ b/workflows/kallisto/kallisto-index.cwl
@@ -1,14 +1,14 @@
#!/usr/bin/env cwl-runner
-cwlVersion: v1.0
+cwlVersion: v1.2
class: CommandLineTool
hints:
DockerRequirement:
- dockerPull: quay.io/biocontainers/kallisto:0.46.2--h4f7b962_1
+ dockerPull: quay.io/biocontainers/kallisto:0.51.0--h6de1650_0
SoftwareRequirement:
packages:
kallisto:
- version: [ "0.46.0" ]
+ version: [ "0.51.0" ]
specs: [ https://identifiers.org/biotools/kallisto ]
requirements:
diff --git a/workflows/kallisto/kallisto-quant.cwl b/workflows/kallisto/kallisto-quant.cwl
index 9d6df5f..b376221 100755
--- a/workflows/kallisto/kallisto-quant.cwl
+++ b/workflows/kallisto/kallisto-quant.cwl
@@ -1,14 +1,14 @@
#!/usr/bin/env cwl-runner
-cwlVersion: v1.0
+cwlVersion: v1.2
class: CommandLineTool
hints:
DockerRequirement:
- dockerPull: quay.io/biocontainers/kallisto:0.46.2--h4f7b962_1
+ dockerPull: quay.io/biocontainers/kallisto:0.51.0--h6de1650_0
SoftwareRequirement:
packages:
kallisto:
- version: [ "0.46.0" ]
+ version: [ "0.51.0" ]
specs: [ https://identifiers.org/biotools/kallisto ]
inputs:
--
GitLab