diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..9e3544d4b4e48d30f1ef3d42d23d72edc5483959 --- /dev/null +++ b/README.md @@ -0,0 +1,54 @@ +## Physiology, biochemistry and anatomy of young fully geown leaves from Brassicaceae species with C<sub>3 </sub>and C<sub>3</sub>-C<sub>4 </sub>(C<sub>2</sub>) photosynthesis ## + +**Aim of study**:<br> Identification of physiological, biochemical and anatomical features related to the C<sub>3</sub>-C<sub>4</sub> photosynthesis phenotype in the Brassicaceae <br> + +**Species/taxa**: C<sub>3</sub>-C<sub>4</sub> phenotype in bold, *C. gynandra* is C<sub>4</sub> phenotype, all others with C<sub>3</sub> phenotype<br> + +- *Arabidopsis thaliana* (L.) Heynh. (At), +- ***Brassica gravinae*** Ten. (4 accessions, Bg1, Bg2, Bg3 and Bg4), +- *Brassica juncea* (L.) Czern. (Bj), +- *Brassica napus* L. (Bn), +- *Brassica nigra* (L.) W.D.J. Koch subsp.nigra va nigra (Bni), +- *Brassica oleraceae* L. (Bo), +- *Brassica rapa* L. (Br), +- *Brassica repanda* (Willd.) (Be), +- *Brassica tournefortii* Gouan. (2 accessions, Bt1 and Bt2), +- *Carrichtera annua* (L.) DC. (Ca), +- *Diplotaxis acris* Boiss. (Da), +- ***Diplotaxis erucoides*** (L.) DC. (De), +- *Diplotaxis harra* Boiss. (Dh), +- ***Diplotaxis muralis*** (L.) DC. (Dm), +- ***Diplotaxis tenuifolia*** (L.) DC. (Dt), +- *Diplotaxis tenuisiliqua* Delile (Ds), +- *Diplotaxis viminea* (L.) DC. (Dv), +- *Eruca sativa* Mill. (Es), +- *Hirschfeldia incana* (L.) Lagr.-Foss (2 accessions HIR1 and **HIR3**), +- ***Moricandia arvensis*** (L.) DC. (Ma), +- *Moricandia moricandioides* (Boiss.) Heywood (Mm), +- ***Moricandia nitens*** E.Durand & Barratte (Mn), +- ***Moricandia sinaica*** Boiss. (Msi), +- ***Moricandia spinosa*** Pomel (Mp), +- ***Moricandia suffruticosa*** (Desf.) Coss. & Durieu(Ms), +- *Raphanus raphanistrum* L. (Rr), +- *Raphanus sativus* subsp sativus (L.) (Rs) +- *Sinapis alba* L. (Sa) +- *****Gynandropsis gynandra***** (L.) Briq. /*****Cleome gynanadra***** L. <br> + +**Analysis/measurements**: + +- gas exchange by Li6800 IRGA measuring A-ci response and calculation of CO<sub>2 </sub> compensation point +- primary metabolite pattern by GCMS +- element analysis (CN ratio, <sup>13</sup>C) by EA-IRMS +- vein density (vein length per area) +- PEPC activity in leaf extracts by spectrophotometry +- Specific leaf area (area per dry weight) +- analysis of leaf cross sections by light microscopy and determination of organelle area in bundle sheath facing vein or mesopyll/intercellular space +<br> +*Data presentation*: <br> +This ARC contains the datasets containing data measured per single plant and the raw data for the GCMS and EA-IRMS analysis. + + +**Publication**: <br> Results and discussion of the presented data has been published in the following paper: <br>**Schlüter, U., Bouvier, J. W., Guerreiro, R., Malisic, M., Kontny, C., Westhoff, P., Stich, B. & Weber, A. +P. M.** (2023), Brassicaceae display diverse photorespiratory carbon recapturing mechanisms, *Journal of Experimental Botany*, https://doi.org/10.1093/jxb/erad250<br> +Analysis of the genomes of the selected species/taxa can be found in the following paper:<br> **Guerreiro R, Bonthala VS, Schlüter U, Triesch S, Weber APM, Stich B.** 2023. A genomic panel for studying C3–C4 intermediate photosynthesis in the Brassiceae tribe. Plant, Cell & Environment https://doi.org/10.1111/pce.14662. <br> +Analysis of the GLDP1 promoter and the potential involvement of transposible elements in evolution of C<sub>3</sub>-C<sub>4</sub> phenotype in the Brassicaceae is discussed in:<br> **Triesch S, Denton AK, Buchmannn JP, Reichel-Deland V, Guerreiro R, Schlüter U, Weber APM.** 2023. Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species. doi: https://doi.org/10.1101/2022.12.06.519256