diff --git a/assays/StatisticalAnalysis/protocols/EstimationOfHeritability.md b/assays/StatisticalAnalysis/protocols/EstimationOfHeritability.md new file mode 100644 index 0000000000000000000000000000000000000000..8757d2091f3d7bbef1d1a1e0a2d6814c853beba0 --- /dev/null +++ b/assays/StatisticalAnalysis/protocols/EstimationOfHeritability.md @@ -0,0 +1,15 @@ +## Estimation of heritability + +Broad-sense heritability $(â H^2)$ was estimated for both field and climate chamber experiments based on the following method: + +**(8)** +$$H^2 = \frac{\sigma_G^2}{\sigma_G^2 + \frac{\bar{\upsilon}_\delta^BLUE}{2}}$$ +where $\sigma_G^2$ was the genotypic variance calculated based on the above models with a random effect for $G_i$ and $\bar{\upsilon}_\delta^BLUE$ was the mean variance of the difference of two genotypic means (Holland et al., 2003; Piepho and Möhring, 2007). + +To avoid the effect of the varying number of replicates, the $H^2$ of photosynthesis-related parameters was estimated for each developmental stage based on the following equation: + +**(9)** +$$H^2 = \frac{\sigma_G^2}{\sigma_G^2 + \frac{\sigma_{G:E}^2}{5} + \frac{\sigma_e^2}{5}} +where $\sigma_{G:E}^2$ was the variance of the interaction of barley inbreds and environments, and $\sigma_e^2$ was the residual variance. + +We used the statistical software R to perform all statistical analyses. \ No newline at end of file