diff --git a/assays/AbsorptionSpectraAndODMeasurements/isa.assay.xlsx b/assays/AbsorptionSpectraAndODMeasurements/isa.assay.xlsx index dfa20d8968ca0b72391682d571b53b7c6a3576c1..4611859711d38d5f0f86a56ebc885b2d3bffe658 100644 Binary files a/assays/AbsorptionSpectraAndODMeasurements/isa.assay.xlsx and b/assays/AbsorptionSpectraAndODMeasurements/isa.assay.xlsx differ diff --git a/assays/AbsorptionSpectraAndODMeasurements/protocols/AbsorptionSpectraAndODMeasurements.md b/assays/AbsorptionSpectraAndODMeasurements/protocols/AbsorptionSpectraAndODMeasurements.md index 222ba1862493f0552b10227729abbe93308450e4..c4aa5c3e7d5810eb26b666395108308f62c8e5c5 100644 --- a/assays/AbsorptionSpectraAndODMeasurements/protocols/AbsorptionSpectraAndODMeasurements.md +++ b/assays/AbsorptionSpectraAndODMeasurements/protocols/AbsorptionSpectraAndODMeasurements.md @@ -1,2 +1,3 @@ ## Absorption spectra and OD measurements + Absorption spectra and OD measurements were carried out in 1 ml polystyrene cuvettes in a SPECORD 200 Plus Spectrophotometer (Analytik Jena) with BG11 as a blank and as a reference sample. Samples were diluted with BG11 to be within an absorption range of 0.1 to 1.0 to ensure accurate measurements. Cell densities for *Synechocystis* were measured at 750 nm. \ No newline at end of file diff --git a/assays/DCWMeasurement/isa.assay.xlsx b/assays/DCWMeasurement/isa.assay.xlsx index 7714e81c20dcfafff88e6ed39b5e09d3a782afad..b50a0a57e3f3f995f6cedee29d561e3b8a17442c 100644 Binary files a/assays/DCWMeasurement/isa.assay.xlsx and b/assays/DCWMeasurement/isa.assay.xlsx differ diff --git a/assays/GC-MSMeasurementsForTheQuantificationOfSqualene/isa.assay.xlsx b/assays/GC-MSMeasurementsForTheQuantificationOfSqualene/isa.assay.xlsx index 700f7d74c699e6cd8092353906e7cdc34ff00351..d87ede4b62b6416622f6a5de7b423cef63424529 100644 Binary files a/assays/GC-MSMeasurementsForTheQuantificationOfSqualene/isa.assay.xlsx and b/assays/GC-MSMeasurementsForTheQuantificationOfSqualene/isa.assay.xlsx differ diff --git a/assays/MetabolicModeling/isa.assay.xlsx b/assays/MetabolicModeling/isa.assay.xlsx index 75fbcc60b0016062149f32a10567453391ebe5c7..b25412cf8e6ed6e39aaaed5a38d4a542621b4dd4 100644 Binary files a/assays/MetabolicModeling/isa.assay.xlsx and b/assays/MetabolicModeling/isa.assay.xlsx differ diff --git a/assays/PigmentQuantification/isa.assay.xlsx b/assays/PigmentQuantification/isa.assay.xlsx index 205414e723dc21370243df04c056da4612ade4ad..1b8824335c5f124ab06b3d429682f25c3ab71d74 100644 Binary files a/assays/PigmentQuantification/isa.assay.xlsx and b/assays/PigmentQuantification/isa.assay.xlsx differ diff --git a/assays/cPCR/isa.assay.xlsx b/assays/cPCR/isa.assay.xlsx index 600018ee5c5f5b57233bff264af43dbac67f5528..dddc5665aec4a9b51034ef138409208a8ca61937 100644 Binary files a/assays/cPCR/isa.assay.xlsx and b/assays/cPCR/isa.assay.xlsx differ diff --git a/assays/qPCR/isa.assay.xlsx b/assays/qPCR/isa.assay.xlsx index f68e337e5c7717add5060f0ea1ade5f720ea0c78..2de432690d27dd6587ca4a4562082cbcc75b215e 100644 Binary files a/assays/qPCR/isa.assay.xlsx and b/assays/qPCR/isa.assay.xlsx differ diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index fdaf9fdb6aac515b97f48b8714b09eddf085f085..4573157ea16b47676f773bf93c5c8ee6166725bf 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ diff --git a/studies/Englund-2014/isa.study.xlsx b/studies/Englund-2014/isa.study.xlsx index ab8902acd6c55e12f49f27285dc6d1c6d000c8d1..46ff8302a757dc4b3887250155f4f14066664b70 100644 Binary files a/studies/Englund-2014/isa.study.xlsx and b/studies/Englund-2014/isa.study.xlsx differ diff --git a/studies/KnoopAndSteuer-2015/isa.study.xlsx b/studies/KnoopAndSteuer-2015/isa.study.xlsx index 80f629eaf7080ddae6765a62d66dcb4187c21729..c65523a7b190acd09377adc91e74cdf653a5d885 100644 Binary files a/studies/KnoopAndSteuer-2015/isa.study.xlsx and b/studies/KnoopAndSteuer-2015/isa.study.xlsx differ diff --git a/studies/MeasurementsOfSqualeneProduction/isa.study.xlsx b/studies/MeasurementsOfSqualeneProduction/isa.study.xlsx index 522bafa87f35ef7b8daf6edee18bad3946fca6b0..c58dff84fef707d4ecfe75d705cf97598be95964 100644 Binary files a/studies/MeasurementsOfSqualeneProduction/isa.study.xlsx and b/studies/MeasurementsOfSqualeneProduction/isa.study.xlsx differ diff --git a/studies/MeasurementsOfSqualeneProduction/protocols/QuantificationOfSqualeneProduction.md b/studies/MeasurementsOfSqualeneProduction/protocols/QuantificationOfSqualeneProduction.md index 9d64d14dee6d3022539b43f126c56a60f1879431..210fa55b25ab6b01dba9cec3a5804160ac4261f5 100644 --- a/studies/MeasurementsOfSqualeneProduction/protocols/QuantificationOfSqualeneProduction.md +++ b/studies/MeasurementsOfSqualeneProduction/protocols/QuantificationOfSqualeneProduction.md @@ -1,2 +1,3 @@ ## Quantification of squalene production + For measurements of squalene production over time, 30 ml of BG11 were inoculated from a pre-culture to OD750 = 0.4, supplemented with 5 mM of rhamnose and incubated over 14 days. Samples were taken daily for the first four days, every second day for the following six days and after 14 days. The lost culture volume from sampling was replaced with fresh BG11 containing appropriate antibiotics and 5 mM of rhamnose. \ No newline at end of file diff --git a/studies/PlasmidAndStrainConstruction/isa.study.xlsx b/studies/PlasmidAndStrainConstruction/isa.study.xlsx index add116d522806561a03f88b2e6b9d513cab1c34d..16840b9f1a5c686e178cce79c5434e0435c997f2 100644 Binary files a/studies/PlasmidAndStrainConstruction/isa.study.xlsx and b/studies/PlasmidAndStrainConstruction/isa.study.xlsx differ diff --git a/studies/Synechocystis/isa.study.xlsx b/studies/Synechocystis/isa.study.xlsx index 0eaab6e34adc7b597404a948dd8b83c7d2127528..9708fce3b85256ae662908855e5a393340ec4fc3 100644 Binary files a/studies/Synechocystis/isa.study.xlsx and b/studies/Synechocystis/isa.study.xlsx differ