diff --git a/.gitattributes b/.gitattributes index d99cf2364dddefef1dd37176d5ccda83c4a4e2de..fb6ffed757f0c6479bb147576d499126e27f1a89 100644 --- a/.gitattributes +++ b/.gitattributes @@ -8,3 +8,4 @@ assays/Mini-Tn5TransposonMutantInR401andR569/dataset/.gitkeep filter=lfs diff=lf assays/Mini-Tn5ScreenLossOfR401sGrowthInhibitionRsGMI1600/dataset/.gitkeep filter=lfs diff=lfs merge=lfs -text assays/Mini-Tn5ForPyoverdineLackofR569/dataset/.gitkeep filter=lfs diff=lfs merge=lfs -text assays/Mini-Tn5IdentificationofIntegrationSitesR401andR569/dataset/.gitkeep filter=lfs diff=lfs merge=lfs -text +assays/ComplementationR401pvdY/dataset/.gitkeep filter=lfs diff=lfs merge=lfs -text diff --git a/assays/ComplementationR401pvdY/README.md b/assays/ComplementationR401pvdY/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/ComplementationR401pvdY/dataset/.gitkeep b/assays/ComplementationR401pvdY/dataset/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/ComplementationR401pvdY/isa.assay.xlsx b/assays/ComplementationR401pvdY/isa.assay.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..981f97cfbe1278262d6f3099df057f033f4c56d6 Binary files /dev/null and b/assays/ComplementationR401pvdY/isa.assay.xlsx differ diff --git a/assays/ComplementationR401pvdY/protocols/.gitkeep b/assays/ComplementationR401pvdY/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git "a/assays/ComplementationR401pvdY/protocols/ComplementationR401\342\210\206pvdy.md" "b/assays/ComplementationR401pvdY/protocols/ComplementationR401\342\210\206pvdy.md" new file mode 100644 index 0000000000000000000000000000000000000000..8432656edb7bf52cc0311e1ed156ff80e5a775be --- /dev/null +++ "b/assays/ComplementationR401pvdY/protocols/ComplementationR401\342\210\206pvdy.md" @@ -0,0 +1,5 @@ +## Complementation of R401 ∆pvdy + +Complementation of R401 *∆pvdy* was conducted by expressing the coding region of R401 *pvdY* under its putative native promoter from a low-copy plasmid in the *∆pvdy* mutant background. Plasmid construction was conducted using Gibson assembly as described before. In brief, the coding region of R401 *pvdY* was co amplified with a 1.5 kb region upstream of the gene and ligated into a linearized pSEVA22l (18) vector backbone. This vector was integrated into *E. coli* BW29427 cells and subsequently integrated into R401 *∆pvdy via* bi-parental conjugation. + +(18) E. MartÃnez-GarcÃa, *et al.*, SEVA 3.0: an update of the Standard European Vector Architecture for enabling portability of genetic constructs among diverse bacterial hosts. *Nucleic Acids Res* **48**, D1164–D1170 (2020). \ No newline at end of file