diff --git a/assays/IdentificationOfClustersOfR-genes/isa.assay.xlsx b/assays/IdentificationOfClustersOfR-genes/isa.assay.xlsx index 487ee850f9cea1a36b86066583e138cb8d45b04d..e6edc63961f4d0f52b906528ab0d9afba76fdbe7 100644 Binary files a/assays/IdentificationOfClustersOfR-genes/isa.assay.xlsx and b/assays/IdentificationOfClustersOfR-genes/isa.assay.xlsx differ diff --git a/assays/miRNATargetingPrediction/README.md b/assays/miRNATargetingPrediction/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/miRNATargetingPrediction/dataset/.gitkeep b/assays/miRNATargetingPrediction/dataset/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/miRNATargetingPrediction/isa.assay.xlsx b/assays/miRNATargetingPrediction/isa.assay.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..d1989ec40bd059bdea75d60ae90533bbbb815ee6 Binary files /dev/null and b/assays/miRNATargetingPrediction/isa.assay.xlsx differ diff --git a/assays/miRNATargetingPrediction/protocols/.gitkeep b/assays/miRNATargetingPrediction/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/miRNATargetingPrediction/protocols/TargetingPredictionOfmiRNA.md b/assays/miRNATargetingPrediction/protocols/TargetingPredictionOfmiRNA.md new file mode 100644 index 0000000000000000000000000000000000000000..b79ff0849f5c5c25cc9d1324a823d9218531b0f1 --- /dev/null +++ b/assays/miRNATargetingPrediction/protocols/TargetingPredictionOfmiRNA.md @@ -0,0 +1,3 @@ +## miRNA targeting prediction + +To predict potential regulation of *R*-genes by the miR482-superfamily (de Vries et al., 2015), we used psRNATarget (release 2017; Dai et al., 2018). We used the coding sequence (CDS) of our *R*-genes as the target library. To ensure a low rate of false-positives, the maximum expectation was set to ≤3, since higher expectation values represent less likely mRNA/miRNA interactions. We evaluated the likelihood of an *R*-gene being targeted by the miR482 superfamily and whether the *R*-gene encoded a full length NBS-LRR and or belonged to a *R*-gene cluster using a chi-square test (Greenwood and Nikulin, 1996). \ No newline at end of file