# Transcriptome Data Sets  **Figure S1: Composition of data set** This study is based on 315 transcriptomes (133 from tomato (a), 182 from potato (b)) and includes seven plant pathogen domains (bacteria, fungi, oomycetes, nematodes, viroids, viruses, insects). The pathogens include common pests of tomato and potato as well as mycorrhizal forming organisms and potential biocontrol agents (green cross/grey text). The pathogens belong to biotrophic (green circle), necrotrophic (brown circle), hemibiotrophic (green-brown circle) as well as unknown (grey circle) or none categorical (pink circle) pathogens. We included transcriptomes from root, fruit, stem and leaves of resistant (shield) as well as susceptible cultivars (crossed-out shield) that were generated at 12 different time points (0 dpi until the end of the life cycle of the plant). Cultivars ranged from 13 (a) to 15 (b) per host.