
# setting up this arc

> using arcCommander v0.3.1

```bash
arc init
arc i create -i "Ricinus proteome"
mkdir _NicolesData; touch _NicolesData/.gitkeep
```

## add raw dataset as retrieved from Anja Stefanski via Sciebo (06.04.2022)

### setup assay structure

```bash
arc assay add -s "2012_ricinus_proteome_wrobel" -a "2012_proteome_data_bmfz_stefanski"
```

### run md5s on downloaded data

```bash
md5 ~/Downloads/Daten\ Linka/*.raw > _NicolesData/raw_data_md5s.txt
```

### Add large data to gitignore for now...

```bash
printf "\n*.raw" >> .gitignore
```

### add downloaded data to arc

```bash
mv ~/Downloads/Daten\ Linka/Messliste_Wrobel.xlsx _NicolesData/
mv ~/Downloads/Daten\ Linka/*.raw assays/2012_proteome_data_bmfz_stefanski/dataset
```

### sync arc with GitLab

```bash
arc sync -m "add raw data from bmfz"
```
