
# Notes on proteomics software

- [MaxQuant](#maxquant)
  - [installation](#installation)
  - [tutorial](#tutorial)
  - [galaxy](#galaxy)
- [rawrr package](#rawrr-package)
- [pyteomics](#pyteomics)

## MaxQuant

### installation

### tutorial

- hot to run maxquant on linux: https://youtu.be/KHdvO1M85VM
- requires windows...

### galaxy 
- https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/maxquant-label-free/tutorial.html


## rawrr package

- The rawrr R Package: Direct Access to Orbitrap Data and Beyond
- https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00866


## pyteomics 

- https://github.com/levitsky/pyteomics