diff --git a/_NicolesData/20221114_Supplemental Table S4.xlsx b/_NicolesData/20221114_Supplemental Table S4.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..d84049e53336fd2d367dd9f92b3b4e3339340ab7 Binary files /dev/null and b/_NicolesData/20221114_Supplemental Table S4.xlsx differ diff --git a/_NicolesData/Literature/README.md b/_NicolesData/Literature/README.md new file mode 100644 index 0000000000000000000000000000000000000000..25b8cdf239667c9a367ac2d200dfd8dea40faa35 --- /dev/null +++ b/_NicolesData/Literature/README.md @@ -0,0 +1,11 @@ + +# Literature notes + +## [Crook_2019.pdf](Crook_2019.pdf) + - refers to https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6053703/ + - refers to https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729960/ "A draft map of the mouse pluripotent stem cell spatial proteome" + + +## [Christoforou_2016.pdf](Christoforou_2016.pdf) + + - "Localization of organelle proteins by isotope tagging (LOPIT) is a quantitative proteomics method for the high throughput and simultaneous characterization of multiple subcellular compartments, without the requirement for total purification of compartments of interest12. LOPIT combines biochemical fractionation by density-gradient ultracentrifugation, sample multiplexing by in vitro covalent labelling, and liquid chromatography-mass spectrometry." \ No newline at end of file diff --git a/workflows/.gitkeep b/workflows/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/workflows/2022-04-13_skim_results.Rmd b/workflows/2022-04-13_FirstIterations/2022-04-13_skim_results.Rmd similarity index 100% rename from workflows/2022-04-13_skim_results.Rmd rename to workflows/2022-04-13_FirstIterations/2022-04-13_skim_results.Rmd diff --git a/workflows/2022-04-13_skim_results.pdf b/workflows/2022-04-13_FirstIterations/2022-04-13_skim_results.pdf similarity index 100% rename from workflows/2022-04-13_skim_results.pdf rename to workflows/2022-04-13_FirstIterations/2022-04-13_skim_results.pdf diff --git a/workflows/pca_plot_excl_ER.png b/workflows/2022-04-13_FirstIterations/pca_plot_excl_ER.png similarity index 100% rename from workflows/pca_plot_excl_ER.png rename to workflows/2022-04-13_FirstIterations/pca_plot_excl_ER.png diff --git a/workflows/pca_plot_individuals.png b/workflows/2022-04-13_FirstIterations/pca_plot_individuals.png similarity index 100% rename from workflows/pca_plot_individuals.png rename to workflows/2022-04-13_FirstIterations/pca_plot_individuals.png diff --git a/workflows/pca_plot_individuals_labelled.png b/workflows/2022-04-13_FirstIterations/pca_plot_individuals_labelled.png similarity index 100% rename from workflows/pca_plot_individuals_labelled.png rename to workflows/2022-04-13_FirstIterations/pca_plot_individuals_labelled.png