diff --git a/_DominikNotes/README.md b/_DominikNotes/README.md index 52d39b37e74ada8091b9368756ff1441edb7aa62..f8b19ce0a1d6987bdab2b17afde808eb51c0c895 100644 --- a/_DominikNotes/README.md +++ b/_DominikNotes/README.md @@ -15,6 +15,7 @@ mkdir _NicolesData; touch _NicolesData/.gitkeep ```bash arc assay add -s "2012_ricinus_proteome_wrobel" -a "2012_proteome_data_bmfz_stefanski" +arc assay add -s "2012_ricinus_proteome_wrobel" -a "2022-04-13_proteome_discoverer" ``` ### run md5s on downloaded data diff --git a/assays/2022-04-13_proteome_discoverer/README.md b/assays/2022-04-13_proteome_discoverer/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/2022-04-13_proteome_discoverer/dataset/.gitkeep b/assays/2022-04-13_proteome_discoverer/dataset/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/2022-04-13_proteome_discoverer/dataset/AllProteins.fasta b/assays/2022-04-13_proteome_discoverer/dataset/AllProteins.fasta new file mode 100644 index 0000000000000000000000000000000000000000..0b6fe8c34847d23d5cc987aa7bee27cb71e5dca9 --- /dev/null +++ b/assays/2022-04-13_proteome_discoverer/dataset/AllProteins.fasta @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d5c7585fd4015ec6b532ff1cfbc691ced1f1bdcc27dc34f4edea0a57344814cf +size 1814424 diff --git a/assays/2022-04-13_proteome_discoverer/dataset/quantification.xlsx b/assays/2022-04-13_proteome_discoverer/dataset/quantification.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..47967ba188df565d94dc8d58359885405c0f8a78 --- /dev/null +++ b/assays/2022-04-13_proteome_discoverer/dataset/quantification.xlsx @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:949e0dbf38dd4ee0c7157801e810c156abcc7b32f17fe31d14062e1d48becfe5 +size 1718573 diff --git a/assays/2022-04-13_proteome_discoverer/dataset/quantification_with_peptides.xlsx b/assays/2022-04-13_proteome_discoverer/dataset/quantification_with_peptides.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..392112d590ceb91310eb517ae6f2b9d1c9e29626 --- /dev/null +++ b/assays/2022-04-13_proteome_discoverer/dataset/quantification_with_peptides.xlsx @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7cc0e17986891e6e1014d8eb829c11ad49cd6b5e9f2a3da416dcbde8fea0ac94 +size 9332646 diff --git a/assays/2022-04-13_proteome_discoverer/isa.assay.xlsx b/assays/2022-04-13_proteome_discoverer/isa.assay.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..2dddbbcccd681e2519ddd1167908c0550f0ac406 Binary files /dev/null and b/assays/2022-04-13_proteome_discoverer/isa.assay.xlsx differ diff --git a/assays/2022-04-13_proteome_discoverer/protocols/.gitkeep b/assays/2022-04-13_proteome_discoverer/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index 194a4aedfc1e41769a3a62420faa5c7768ac67ee..fd52ace2e480a4ff69d83832732018c0fad8e9f5 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ