diff --git a/.gitignore b/.gitignore index f4f319b160e7163881f8a4bee64ff036beb05813..6d0a2d91b73dbc9fac7bb45be749f6f9f2196216 100644 --- a/.gitignore +++ b/.gitignore @@ -382,3 +382,5 @@ Network Trash Folder Temporary Items .apdisk + +*.raw \ No newline at end of file diff --git a/README.md b/README.md index be8ee45d6893b030cf1bc1954f55914cb77d4292..2b846b12018cf178bb733ed6ef439b42c19894a3 100644 --- a/README.md +++ b/README.md @@ -12,11 +12,35 @@ arc i create -i "Ricinus proteome" mkdir _NicolesData; touch _NicolesData/.gitkeep ``` -## add raw dataset as retrieve from Anja Stefanski via Sciebo (06.04.2022) +## add raw dataset as retrieved from Anja Stefanski via Sciebo (06.04.2022) + +### setup assay structure ```bash arc assay add -s "2012_ricinus_proteome_wrobel" -a "2012_proteome_data_bmfz_stefanski" +``` + +### run md5s on downloaded data + +```bash +md5 ~/Downloads/Daten\ Linka/*.raw > _NicolesData/raw_data_md5s.txt +``` -cp ~/Download +### Add large data to gitignore for now... +```bash +printf "\n*.raw" >> .gitignore +``` + +### add downloaded data to arc + +```bash +mv ~/Downloads/Daten\ Linka/Messliste_Wrobel.xlsx _NicolesData/ +mv ~/Downloads/Daten\ Linka/*.raw assays/2012_proteome_data_bmfz_stefanski/dataset +``` + +### sync arc with GitLab + +```bash +arc sync -m "add raw data from bmfz" ``` \ No newline at end of file diff --git a/_NicolesData/Messliste_Wrobel.xlsx b/_NicolesData/Messliste_Wrobel.xlsx new file mode 100755 index 0000000000000000000000000000000000000000..07525057b19c6cbf4962f7ec618f7f6bfb237a9a Binary files /dev/null and b/_NicolesData/Messliste_Wrobel.xlsx differ diff --git a/_NicolesData/raw_data_md5s.txt b/_NicolesData/raw_data_md5s.txt new file mode 100644 index 0000000000000000000000000000000000000000..ad6f48c39c039691490b3518e10966cb5b0a229f --- /dev/null +++ b/_NicolesData/raw_data_md5s.txt @@ -0,0 +1,26 @@ +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02336.raw) = df329fb56d693c51d3f4f9e9d47bf3f6 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02337.raw) = 20f1c046899975cb9bba5fec47aed31d +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02339.raw) = 8ec359bfc6bd2f2edfd28ea21f28bd2a +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02340.raw) = a36bf4b606dc008b873cb6fa22582027 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02342.raw) = f09d2eb6867a304f4dec8e5465ea96f2 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02343.raw) = 14da4e792980dea5cf8e75f39d8c58ad +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02345.raw) = df4a4da1c7d9917d50062c73f13054d3 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02346.raw) = 9d1e5fbbe9db3422d74c9403ce9472da +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02396.raw) = 9cece1c71528c47f3fa13b05bedb95fb +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02397.raw) = 5dcd5bd48c3ffc0facc61171e1a43919 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02399.raw) = b6b2d9c4cf72affefaede1c17e3dbd2c +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02400.raw) = 7369ddf770d2e17d12f098fd7df656ef +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02402.raw) = 08d7429cebe720c73d8f6a3dd3570933 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02403.raw) = ffb4fd4313959d6ce387d2cc099fc00f +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02405.raw) = aad6229645856756a1226c691b98fc83 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02406.raw) = 32895aa1155cda14463f52bf9c575740 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02408.raw) = 39f9bde1f8fd35de6f0886a479f85286 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02409.raw) = 124d15829581e8b193f1949e3f14fc63 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02412.raw) = fa0bb5abb901d306bad4d985251537af +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02413.raw) = eef196922615cd0311c65b088b6cf65e +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02415.raw) = fc61cf631605902e7b5fb014520bf8c9 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02416.raw) = c42adb8280c8d2fcfef6b593da758cf8 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02418.raw) = 53abf117bfee8c93bfe44621c7e94254 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02419.raw) = 82e68d8c0952bef1404ce4f489cfcac4 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02421.raw) = 23404ff8e4d443a344b00b0639d567f4 +MD5 (/Users/dominikbrilhaus/Downloads/Daten Linka/OE02422.raw) = 1b971dd0963daa184e34d0725c3f59c0