# Meeting Anja Stefanski

> 12.04.2022 - 10:30 - Webex

- sample quality not soo good
- data analysis with proteome discoverer (thermo fisher)
  - maxquant is good, but tricky for newbies
- identification or quantification
  - quantification possible with triplicates

## to dos

### Dominik

- [x] send back sample list
  - indicate order of fractions (F1-F4)
  - species used

### Anja

- runs DA in standard pipeline (proteome discoverer)
  - ricinus proteome / reference from uniprot? If available
  - t-test, fold changes, ratios, normalised abundances for every peptide => plenty of excel tables
  - possible output fasta of identified peptides / proteins?