#!/bin/bash

#$ -N Quast_all
#$ -cwd
#$ -o ../logs/$JOB_NAME.$JOB_ID.log
#$ -e ../logs/$JOB_NAME.$JOB_ID.error
#$ -pe smp 56
#$ -l h_vmem=4.4G

#########################################################
INPUT=/mnt/data/arslan/Teas/02_Assembly_QA/Input
OUTPUT=/mnt/data/arslan/Teas/02_Assembly_QA/QUAST/Quast_results

export PATH="/mnt/data/arslan/tool/quast/:$PATH"

mkdir -p ${OUTPUT}
cd ${INPUT}

quast.py -o ${OUTPUT} -t ${NSLOTS} \
Anjibaicha.fa \
Biyun.fa \
DASZ.fa \
DuyunMaojian.fa \
Huangdan.fa \
L618.fa \
LJ43.fa \
Shuchazao.fa \
Tieguanyin.fa \
Yunkang10.fa \
Zijuan.fa
