diff --git a/studies/phenotyping_eam7_plants/README.md b/studies/phenotyping_eam7_plants/README.md index 980ecdc7789f3b0601ac030e0b83dc32ea202767..8a9cee1bd029adb66421586abf92297a2c7384ef 100644 --- a/studies/phenotyping_eam7_plants/README.md +++ b/studies/phenotyping_eam7_plants/README.md @@ -1,26 +1,23 @@ ## Phenotype *eam7* plants under SD and LD conditions -Grow plants under short-day (SD) and long-day (LD) conditions. Score flowering time and phenotypic traits at flowering and at harvest when plants are fully dry. +Grow BW, BW(*Ppd-H1*), BW(*eam7*), and BW(*Ppd-H1,eam7*) plants under short-day (SD) and long-day (LD) conditions. Score flowering time and phenotypic traits at flowering and at harvest when plants are fully dry. **Study overview:** - input: BW, BW(Ppd-H1), BW(eam7), BW(Ppd-H1,eam7) grown under SD and LD - - -> assay: plant_phenotyping - output: - SD plants - - flowering time (in DAE) - - at flowering: plant height, leaf number, tiller number, - flag leaf length/width - - at harvest (on main culm): spike length, floret and grain number, - spike fertility - LD plants - - flowering time (in DAE) - - at flowering: plant height, leaf number, tiller number - - at harvest (on main culm): spike length, floret and grain number, - spike fertility - - +```mermaid + flowchart TD; + A[Bowman and introgression lines in SD] --> |plant_phenotyping| B[SD plants: + - flowering time in DAE + - at flowering: plant height, leaf number, tiller number, flag leaf length/width + - at harvest: spike length, floret and grain number, spike fertility] +C[Bowman and introgression lines in LD] --> |plant_phenotyping| D[LD plants: + - flowering time in DAE + - at flowering: plant height, leaf number, tiller number + - at harvest: spike length, floret and grain number, spike fertility ] + +``` + +**Publication:** Results can be found in Figure 1A and B, Figure 2, and Supplemental Figure S2.