diff --git a/assays/RNA_extraction/dataset/eam7_diurnal_RNA_concentration.xlsx b/assays/RNA_extraction/dataset/eam7_diurnal_RNA_concentration.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..beb7fd01c062b339c40e43baf8df95adcac060fb Binary files /dev/null and b/assays/RNA_extraction/dataset/eam7_diurnal_RNA_concentration.xlsx differ diff --git a/assays/RNA_extraction/isa.assay.xlsx b/assays/RNA_extraction/isa.assay.xlsx index 13a2fae1c8303fc126f57ebb00a3072edff57b0d..ce7e33d8080b3f2f666a67da9f21f41780775e00 100644 Binary files a/assays/RNA_extraction/isa.assay.xlsx and b/assays/RNA_extraction/isa.assay.xlsx differ diff --git a/assays/cDNA_synthesis/dataset/eam7_diurnal_cDNA_volumes.xlsx b/assays/cDNA_synthesis/dataset/eam7_diurnal_cDNA_volumes.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..322676467733f75b9bffea7c23ee3452f4ea89b4 Binary files /dev/null and b/assays/cDNA_synthesis/dataset/eam7_diurnal_cDNA_volumes.xlsx differ diff --git a/assays/cDNA_synthesis/isa.assay.xlsx b/assays/cDNA_synthesis/isa.assay.xlsx index f37a3bdaed42ae14de6d0d441082d9d2c0a1bc9e..b592faed616980c05317983cc475e7e4a168dec0 100644 Binary files a/assays/cDNA_synthesis/isa.assay.xlsx and b/assays/cDNA_synthesis/isa.assay.xlsx differ diff --git a/assays/leaf_sampling/README.md b/assays/leaf_sampling/README.md new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/leaf_sampling/dataset/.gitkeep b/assays/leaf_sampling/dataset/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/leaf_sampling/isa.assay.xlsx b/assays/leaf_sampling/isa.assay.xlsx new file mode 100644 index 0000000000000000000000000000000000000000..3a7cb76c7881e5e36ffc5d48e82f9bcc4c4644c1 Binary files /dev/null and b/assays/leaf_sampling/isa.assay.xlsx differ diff --git a/assays/leaf_sampling/protocols/.gitkeep b/assays/leaf_sampling/protocols/.gitkeep new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/assays/leaf_sampling/protocols/leaf_sampling.txt b/assays/leaf_sampling/protocols/leaf_sampling.txt new file mode 100644 index 0000000000000000000000000000000000000000..f22b452cacf21c84ade5b3c29001643a645fb91d --- /dev/null +++ b/assays/leaf_sampling/protocols/leaf_sampling.txt @@ -0,0 +1,8 @@ +leaf sampling for RNA extraction + +- place two 3 mm metal beads into 2.0 ml tube +- always sample the youngest, fully elongated leaf (auricles are clearly visible) +- sample three biological replicates for each genotype and time point +- for each biological replicate: pool the leaf from two plants into one tube +- freeze samples directly in liquid nitrogen +- Store samples at -80°C until needed \ No newline at end of file diff --git a/studies/phenotyping_eam7_plants/isa.study.xlsx b/studies/phenotyping_eam7_plants/isa.study.xlsx index cad82fa6f1ef128ee6899afc9c44d89002d22914..4b6357a732d9b95fe328755dc006bd3838b0be4d 100644 Binary files a/studies/phenotyping_eam7_plants/isa.study.xlsx and b/studies/phenotyping_eam7_plants/isa.study.xlsx differ