From 618e0ddf7e7519a189c646c300f6f57a0569cd74 Mon Sep 17 00:00:00 2001 From: Gesa Helmsorig <gesa.helmsorig@hhu.de> Date: Mon, 28 Oct 2024 13:12:09 +0000 Subject: [PATCH] Update target_genes_results.md --- .../dataset/target_genes_results.md | 42 +++++++++---------- 1 file changed, 21 insertions(+), 21 deletions(-) diff --git a/assays/biparental_mapping/dataset/target_genes_results.md b/assays/biparental_mapping/dataset/target_genes_results.md index 838ca4e..9e25344 100644 --- a/assays/biparental_mapping/dataset/target_genes_results.md +++ b/assays/biparental_mapping/dataset/target_genes_results.md @@ -1,25 +1,25 @@ -**related to the circadian clock** +**related to the circadian clock:** -MorexV3 gene ID pident evalue Araport11 gene ID Gene name SNP positions Changes in aa sequence -HORVU.MOREX.r3.6HG0592840 73.75 2.26E-40 AT2G21660 GR-RBP1 None None -HORVU.MOREX.r3.6HG0583670 69.309 0 AT1G12910 LWD1 32 bp del (1219-1250) A407F - N408S - K409F - L410* -HORVU.MOREX.r3.6HG0587680 66.082 0 AT4G08920 CRY1 None None -HORVU.MOREX.r3.6HG0595250 38.475 3.92E-106 AT5G61380 PRR1 A642G T1300C T215A - S434P -HORVU.MOREX.r3.6HG0578070 55.367 0 AT5G51200 EDS4 - - -HORVU.MOREX.r3.6HG0589220 34.855 9.66E-46 AT3G07640 PBAC5 - - -HORVU.MOREX.r3.6HG0571470 36.735 1.3 AT3G42170 DAY-SLEEPER - - -HORVU.MOREX.r3.6HG0582650 30.108 1.00E-12 AT3G42170 DAY-SLEEPER - - -HORVU.MOREX.r3.6HG0592100 29.042 1.69E-45 AT3G42170 DAY-SLEEPER - - -HORVU.MOREX.r3.6HG0571480 28.319 1.11E-13 AT3G42170 DAY-SLEEPER - - +| MorexV3 gene ID | pident | evalue | Araport11 gene ID | Gene name | SNP positions | Changes in aa sequence | +| ------ | ------ | ------ | ------ | ------ | ------ | ------ | +| HORVU.MOREX.r3.6HG0592840 | 73.75 | 2.26E-40 | AT2G21660 | GR-RBP1 | None | None +| HORVU.MOREX.r3.6HG0583670 | 69.309 | 0 | AT1G12910 | LWD1 | 32 bp del (1219-1250) | A407F, N408S, K409F, L410* | +| HORVU.MOREX.r3.6HG0587680 | 66.082 | 0 | AT4G08920 | CRY1 | None | None | +| HORVU.MOREX.r3.6HG0595250 | 38.475 | 3.92E-106 | AT5G61380 | PRR1 | A642G | T1300C | T215A, S434P | +| HORVU.MOREX.r3.6HG0578070 | 55.367 | 0 | AT5G51200 | EDS4 | - | - | +| HORVU.MOREX.r3.6HG0589220 | 34.855 | 9.66E-46 | AT3G07640 | PBAC5 | - | - | +| HORVU.MOREX.r3.6HG0571470 | 36.735 | 1.3 | AT3G42170 | DAY-SLEEPER | - | - | +| HORVU.MOREX.r3.6HG0582650 | 30.108 | 1.00E-12 | AT3G42170 | DAY-SLEEPER | - | - | +| HORVU.MOREX.r3.6HG0592100 | 29.042 | 1.69E-45 | AT3G42170 | DAY-SLEEPER | - | - | +| HORVU.MOREX.r3.6HG0571480 | 28.319 | 1.11E-13 | AT3G42170 | DAY-SLEEPER | - | - | -**associated with early flowering** -PSEUDO RESPONSE REGULATOR 1 (PRR1) HORVU.MOREX.r3.6HG0595250 -CRYPTOCHROME 1a (CRY1a) HORVU.MOREX.r3.6HG0587680) -GLYCIN-RICH RNA-BINDING-PROTEIN 1 (GR-RBP1) HORVU.MOREX.r3.6HG0592840) -LIGHT-REGULATED WD 1 (LWD1) HORVU.MOREX.r3.6HG0583670 \ No newline at end of file +**associated with early flowering:** + +| gene name | MoresV3 gene ID | +| - | - | +| PSEUDO RESPONSE REGULATOR 1 (PRR1) | HORVU.MOREX.r3.6HG0595250 | +| CRYPTOCHROME 1a (CRY1a) | HORVU.MOREX.r3.6HG0587680) | +| GLYCIN-RICH RNA-BINDING-PROTEIN 1 (GR-RBP1) | HORVU.MOREX.r3.6HG0592840) | +| LIGHT-REGULATED WD 1 (LWD1) | HORVU.MOREX.r3.6HG0583670 | \ No newline at end of file -- GitLab