diff --git a/assays/complementation_plant_genotyping/README.md b/assays/complementation_plant_genotyping/README.md deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/assays/complementation_plant_genotyping/dataset/.gitkeep b/assays/complementation_plant_genotyping/dataset/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/assays/complementation_plant_genotyping/isa.assay.xlsx b/assays/complementation_plant_genotyping/isa.assay.xlsx deleted file mode 100644 index 3dc53d7dc8a62b18c8f57d40b399de5a2267dfd2..0000000000000000000000000000000000000000 Binary files a/assays/complementation_plant_genotyping/isa.assay.xlsx and /dev/null differ diff --git a/assays/complementation_plant_genotyping/protocols/.gitkeep b/assays/complementation_plant_genotyping/protocols/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/assays/plant_propagation/isa.assay.xlsx b/assays/plant_propagation/isa.assay.xlsx index a70c797650e7521748c623c3cb8022d44ddbde3f..a4bee8e30ed7e75582273f301d23a1e1edfbc79c 100644 Binary files a/assays/plant_propagation/isa.assay.xlsx and b/assays/plant_propagation/isa.assay.xlsx differ diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index 349d59643fd141a0f2a579c9df4aa6286077effb..f548dc7d17a0a7bf4542ea53826ab90018f90d39 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ diff --git a/studies/generating_lwd1_mutants/isa.study.xlsx b/studies/generating_lwd1_mutants/isa.study.xlsx index 846d8a964ca3b0c616eb92d6ba0933c5427ea855..b1330cba0c9adc9ae944b82df37fe7232f0ba67c 100644 Binary files a/studies/generating_lwd1_mutants/isa.study.xlsx and b/studies/generating_lwd1_mutants/isa.study.xlsx differ diff --git a/studies/genotyping_lwd1_mutants/README.md b/studies/genotyping_lwd1_mutants/README.md deleted file mode 100644 index 5d85a7607d824ac216c915df00eb230eb079f9d4..0000000000000000000000000000000000000000 --- a/studies/genotyping_lwd1_mutants/README.md +++ /dev/null @@ -1,17 +0,0 @@ -Using CRISPR-Cas9 to generate *lwd1* mutants to confirm LWD1 as the gene underlying the *eam7* locus. Mutants were genotyped by Sanger sequencing. - -**study overview** - - T0 mutant plants (from study "generating_lwd1_mutants" - - -> assay: mutant_genotyping - output: T0 mutant genotype info - - -> assay: plant propagation - output: T1 mutant seeds - - -> assay: plant_genotyping - output: T1 mutant genotype info - - -> assay: plant propagation - output: T2 mutant seeds (used in studies gene_expression_lwd1_mutants" and "phenotyping_lwd1_mutants) \ No newline at end of file diff --git a/studies/genotyping_lwd1_mutants/isa.study.xlsx b/studies/genotyping_lwd1_mutants/isa.study.xlsx deleted file mode 100644 index 775930bcdc67f9e07ffa307f4a66fbf79a7635cf..0000000000000000000000000000000000000000 Binary files a/studies/genotyping_lwd1_mutants/isa.study.xlsx and /dev/null differ diff --git a/studies/genotyping_lwd1_mutants/protocols/.gitkeep b/studies/genotyping_lwd1_mutants/protocols/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/studies/genotyping_lwd1_mutants/resources/.gitkeep b/studies/genotyping_lwd1_mutants/resources/.gitkeep deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000