From 4545fab5bbe62e5a1dae3e999cc15b286792cb2a Mon Sep 17 00:00:00 2001 From: Sebastian Triesch <setri100@hhu.de> Date: Mon, 11 Mar 2024 07:39:53 +0000 Subject: [PATCH] Updated README --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 2890b33..c37940c 100644 --- a/README.md +++ b/README.md @@ -188,7 +188,7 @@ EDTA will produce multiple outputs: make sure to delete headers starting with ### in the respecrtive files, they can't be read by numpy! ### Fig. 2: EDTA results analysis: -The [code for the results presented in Fig.2](https://git.nfdi4plants.org/hhu-plant-biochemistry/triesch2023_brassicaceae_transposons/-/blob/main/workflows/Fig2_genome_size.ipynb) contains a basic analysis of the `EDTA` results. The genome size were hard-coded from the amount of bases in the respective genome .fasta files. It was distinguished between the "FRAGMENTED" and "INTACT" outputs of `EDTA`. +The [code for the results presented in Fig.2](/blob/main/workflows/Fig2_genome_size.ipynb) contains a basic analysis of the `EDTA` results. The genome size were hard-coded from the amount of bases in the respective genome .fasta files. It was distinguished between the "FRAGMENTED" and "INTACT" outputs of `EDTA`. ### Fig.3: TE classes The [code for Fig.3](https://git.nfdi4plants.org/hhu-plant-biochemistry/triesch2023_brassicaceae_transposons/-/blob/main/workflows/Fig3_TE_types.ipynb) contains a breakdown of the TE classes as analyzed in `EDTA`. The lengths of the TEs (as numbers of base pairs) were counted and compared. -- GitLab