2025_mycorrhization_experiment
This is the git repository for the publication:
An ectomycorrhizal fungus alters the developmental stages of endogenous rhythmic growth in pedunculate oak
Authors & Affiliations:
Felix Zimmermann (Corresponding Author; Research Unit Biodiversity and Conservation Biology, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland; felix.zimmermann@wsl.ch; ORCID: 0009-0002-0762-2454)
Marie-Lara Bouffaud (Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle/Saale, Germany; ORCID: 0000-0001-6112-2982)
Sylvie Herrmann (Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle/Saale, Germany; ORCID: 0000-0001-8220-3853)
Marco Göttig (Institute of Biology, Philipps University Marburg, Marburg, Germany)
René Graf (Research Unit Biodiversity and Conservation Biology, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland; ORCID: 0009-0002-9567-9089)
Mika Tarkka (Department of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, Halle/Saale, Germany; ORCID: 0000-0003-4630-351X)
Lars Opgenoorth (Laboratory of Plant Ecology and Geobotany, Institute of Biology, Philipps University Marburg, Marburg, Germany; ORCID: 0000-0003-0737-047X)
Daniel Croll (Laboratory of Evolutionary Genetics, Institute of Biology, University of Neuchâtel, Neuchâtel, Switzerland; ORCID: 0000-0002-2072-380X)
Martina Peter (Research Unit Biodiversity and Conservation Biology, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland; ORCID: 0000-0002-6365-6889)
Benjamin Dauphin (Corresponding Author; Research Unit Biodiversity and Conservation Biology, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland; benjamin.dauphin@wsl.ch; ORCID: 0000-0003-0982-4252)
Content:
Data:
- Here you can find the Phenotypic Data File.
- Here you can find the Timeseries Data File.
- Here you can find the Experimental Setup Data File.
Scripts:
- Here you can find scripts for Figure 1 / Phenotypic Data Analysis.
- Here you can find scripts for Figure 2 / Timeseries Data Analysis.
- Here you can find scripts for the Supplementary Information Analysis.
Results:
- Here you can find results of Figure 1 / Phenotypic Data Analysis.
- Here you can find results of the Figure 2 / Timeseries Data Analysis.
- Here you can find results of the Supplementary Information Analysis.
To use our code:
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Download/clone repository.
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Open the "2025_Myco_Experiment.Rproj" file with RStudio.
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Run scripts under "workflows" (you can find "workflows" under "Files" in the "Files/Plots/Packages etc." window).