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diff --git a/assays/RNAseq_analysis_of_leaf/README.md b/assays/RNAseq_analysis_of_leaf/README.md
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-RNAseq analysis was conducted on the leaf and main shoot apex (MSA) samples separately.
-
-The tables of Count and Transcript per Million (TPM) were obtained using ThreeDRNAseq R package.
-The tables of differentially expressed genes were obtained using EdgeR R package.
-Gene Ontology analysis was performed using the Triticeae-Gene Tribe database (http://wheat.cau.edu.cn/TGT/m15/?navbar=GOEnrichment).
-WCGNA analysis was performed using the WGCNA R package.
+RNAseq analysis was conducted on the leaf and main shoot apex (MSA) samples separately.
+
+The tables of Count and Transcript per Million (TPM) were obtained using ThreeDRNAseq R package.
+The tables of differentially expressed genes were obtained using EdgeR R package.
+Gene Ontology analysis was performed using the Triticeae-Gene Tribe database (http://wheat.cau.edu.cn/TGT/m15/?navbar=GOEnrichment).
+WCGNA analysis was performed using the WGCNA R package.
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+size 8494173
diff --git a/assays/Salmon_quantification/protocols/salmon_indexing.bash b/assays/Salmon_quantification/protocols/salmon_indexing.bash
index 28b510aa46f4973fefbf5d8ac8c377c69cd4d4c1..70a15e79b432ef80bd9a487e8bfdd343e9a38118 100644
--- a/assays/Salmon_quantification/protocols/salmon_indexing.bash
+++ b/assays/Salmon_quantification/protocols/salmon_indexing.bash
@@ -1,7 +1,7 @@
-### Load module
-
-module load Salmon/1.6.0
-
-### Script command
-salmon index -t BaRT.1.0_Unsplit_exons_padded.fasta -i BaRT.1.0_Unsplit_exons_padded.fasta_index
-
+### Load module
+
+module load Salmon/1.6.0
+
+### Script command
+salmon index -t BaRT.1.0_Unsplit_exons_padded.fasta -i BaRT.1.0_Unsplit_exons_padded.fasta_index
+
diff --git a/assays/Salmon_quantification/protocols/salmon_quantification.bash b/assays/Salmon_quantification/protocols/salmon_quantification.bash
index a3e742afd1c83cbd481fd3709e1ada79928af61f..77cb10808d788ca303edafbeb29eaa89984b13b8 100644
--- a/assays/Salmon_quantification/protocols/salmon_quantification.bash
+++ b/assays/Salmon_quantification/protocols/salmon_quantification.bash
@@ -1,8 +1,8 @@
-### Load module
-
-module load Salmon/1.6.0
-
-### Script command
-
-salmon quant -i BaRT.1.0_Unsplit_exons_padded.fasta_index -l A -1 sample_*_1.fq.gz -2 sample_*_2.fq.gz -p 4 --validateMappings -o sample_quant
-
+### Load module
+
+module load Salmon/1.6.0
+
+### Script command
+
+salmon quant -i BaRT.1.0_Unsplit_exons_padded.fasta_index -l A -1 sample_*_1.fq.gz -2 sample_*_2.fq.gz -p 4 --validateMappings -o sample_quant
+