From 5d24327ba574e494c128bd47816b58e67792b39d Mon Sep 17 00:00:00 2001 From: Viktoria Petrova <vipet103@hhu.de> Date: Wed, 12 Mar 2025 13:48:38 +0000 Subject: [PATCH] Revert "rename assay" This reverts commit 1c6646fe12afb061393b686d7fefa93ab4d10984 --- assays/RNAseq_analysis_of_leaf/isa.assay.xlsx | Bin 0 -> 15832 bytes assays/ThreeDRNAseq/README.md | 6 ++++++ assays/ThreeDRNAseq/dataset/.gitkeep | 0 .../dataset/Count_leaf/counts_gene_leaf.csv | 3 +++ .../Count_leaf/counts_transcript_leaf.csv | 3 +++ .../dataset/TPM_leaf/TPM_genes_leaf.csv | 3 +++ .../dataset/TPM_leaf/TPM_transcripts_leaf.csv | 3 +++ assays/ThreeDRNAseq/isa.assay.xlsx | Bin 15832 -> 16005 bytes assays/ThreeDRNAseq/protocols/.gitkeep | 0 9 files changed, 18 insertions(+) create mode 100644 assays/RNAseq_analysis_of_leaf/isa.assay.xlsx create mode 100644 assays/ThreeDRNAseq/README.md create mode 100644 assays/ThreeDRNAseq/dataset/.gitkeep create mode 100644 assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv 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tables of differentially expressed genes were obtained using EdgeR R package. +Gene Ontology analysis was performed using the Triticeae-Gene Tribe database (http://wheat.cau.edu.cn/TGT/m15/?navbar=GOEnrichment). +WCGNA analysis was performed using the WGCNA R package. diff --git a/assays/ThreeDRNAseq/dataset/.gitkeep b/assays/ThreeDRNAseq/dataset/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv new file mode 100644 index 0000000..279960f --- /dev/null +++ b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_gene_leaf.csv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1a5a34441efaa3f7df98bd882157e7b3951984eafde6cc69b6705a90f7f69b42 +size 8506810 diff --git a/assays/ThreeDRNAseq/dataset/Count_leaf/counts_transcript_leaf.csv b/assays/ThreeDRNAseq/dataset/Count_leaf/counts_transcript_leaf.csv new file mode 100644 index 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