Please add a valid title for your ArcInvestigation
Please add a valid description to your ArcInvestigation
Table of Contents
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Studies
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Assays
Graphical overview
---
title: Effects_of_Ppd-H1_and_High_Ambient_Temperatures_in_Barley
---
flowchart TD
classDef investigationStyle fill:#6c7885,color:#2d3e50,fontWeight:bold;
classDef studyStyle fill:#62d4c1,color:#2d3e50,fontWeight:bold;
classDef assayStyle fill:#ffd34d,color:#2d3e50,fontWeight:bold;
classDef processStyle fill:#D46275,color:#2d3e50;
id_0["<no-title>"]
class id_0 investigationStyle;
id_0-->STUDY_id_1
class STUDY_id_1 studyStyle;
subgraph STUDY_id_1[Study: RNAseq_analysis]
end
subgraph ASSAY_id_2[Assay: Salmon_quantification]
end
class ASSAY_id_2 assayStyle;
subgraph ASSAY_id_3[Assay: RNAseq_analysis_of_MSA]
end
class ASSAY_id_3 assayStyle;
subgraph ASSAY_id_4[Assay: RNAseq_raw_data]
id_5[NewTable0]
class id_5 processStyle;
end
class ASSAY_id_4 assayStyle;
subgraph ASSAY_id_6[Assay: RNAseq_analysis_of_leaf]
end
class ASSAY_id_6 assayStyle;
subgraph ASSAY_id_7[Assay: FASTQC]
id_5[NewTable0]
class id_5 processStyle;
end
class ASSAY_id_7 assayStyle;
id_5-->|1|id_5
id_5-->|389|id_8
id_8-->|1|id_5
id_8-->|1|id_8
Additional details
Meta Data | Description |
---|---|
Submission Date | tba |
Public Release Date | tba |
Study identifiers | RNAseq_analysis |
Study Count | 1 |
Assay identifiers | Salmon_quantification , RNAseq_analysis_of_MSA , RNAseq_raw_data , RNAseq_analysis_of_leaf , FASTQC |
Assay Count | 5 |
Assay: RNAseq_raw_data
Additional details
Meta Data | Description |
---|---|
Measurement Type | RNA-Seq |
Technology Type | Illumina NovaSeq 6000 |
Table Count | 1 |
Table Names | NewTable0 |
Sample Count | 406 |
Data File Count | 406 |
Associated studies |
Annotation headers
Parameters: library strategy,library preparation kit,library preparation kit version,adapter sequence,next generation sequencing instrument model,base-calling software,base-calling software version,base-calling software parameters,library strand,Raw data file format
Assay: FASTQC
Additional details
Meta Data | Description |
---|---|
Technology Type | FASTQC |
Table Count | 1 |
Table Names | NewTable0 |
Sample Count | 840 |
Data File Count | 0 |
Associated studies |
Annotation headers
Characteristics: Format