diff --git a/assays/biparental_mapping/dataset/CAPS_results.xlsx b/assays/biparental_mapping/dataset/CAPS_results.xlsx index f516d9a610c744dfb6d37fd3e463092737138b06..fa8750b430e1e475061365cf7c81af0c9c4b7419 100644 Binary files a/assays/biparental_mapping/dataset/CAPS_results.xlsx and b/assays/biparental_mapping/dataset/CAPS_results.xlsx differ diff --git a/assays/biparental_mapping/dataset/introgression_area.xlsx b/assays/biparental_mapping/dataset/introgression_area.xlsx index 62c8a756ef535a3ab9b15229132abebded799093..1870f406bf3f7f35518387d0178e502e3139d8b1 100644 Binary files a/assays/biparental_mapping/dataset/introgression_area.xlsx and b/assays/biparental_mapping/dataset/introgression_area.xlsx differ diff --git a/assays/biparental_mapping/protocols/plant-phenotyping-flowering.md b/assays/biparental_mapping/protocols/plant-phenotyping-flowering.md deleted file mode 100644 index af9ccc1dff559fa3ca18f57b3dcf7f0117700d6f..0000000000000000000000000000000000000000 --- a/assays/biparental_mapping/protocols/plant-phenotyping-flowering.md +++ /dev/null @@ -1,4 +0,0 @@ -**plant phenotyping: flowering** - -- flowering was scored in days after emergence (DAE) as the period between emergence from soil and reaching Zadoks stage 49 when the awns exited the leaf sheath (Zadoks et al. 1974) -- plants that did not flower after 130 DAE were scored as "not flowering" \ No newline at end of file diff --git a/assays/plant_phenotyping/protocols/score_flowering.md b/assays/plant_phenotyping/protocols/score_flowering.md index 9e7063175eb4bde70eb93be8b2447a5e668e1855..4b7c93f67c095c87d8efda2690ad27bc49de1004 100644 --- a/assays/plant_phenotyping/protocols/score_flowering.md +++ b/assays/plant_phenotyping/protocols/score_flowering.md @@ -1,8 +1,10 @@ -## Score flowering - -- score in DAE (days after emergence) as the period between plant emergence from soil and reaching awn emergence on the main culm (Zadoks stage 49, Zadoks et al. (1974)) - - -**References:** - +## Score flowering + +- score in DAE (days after emergence) as the period between plant emergence from soil and reaching awn emergence on the main culm (Zadoks stage 49, Zadoks et al. (1974)) + +**biparental_mapping:** +- plants that did not flower after 130 DAE were scored as "not flowering" + +**References:** + Zadoks JC, Chang TT, Konzak CF. A decimal code for the growth stages of cereals. Weed Res. 1974:14(6):415–421. https://doi.org/10.1111/j.1365-3180.1974.tb01084.x \ No newline at end of file