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a/assays/Brilhaus2015_SE_mRNASeq/protocols/Illumina.md b/assays/Brilhaus2015_SE_mRNASeq/protocols/Illumina.md new file mode 100644 index 0000000000000000000000000000000000000000..fecf1eb717e733b86973299a71f6d3a22811505b --- /dev/null +++ b/assays/Brilhaus2015_SE_mRNASeq/protocols/Illumina.md @@ -0,0 +1,3 @@ +# Preparation and Sequencing of Illumina Libraries + +RNA integrity, sequencing library, and fragment size were analyzed on a 2100 Bioanalyzer (Agilent). Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina) and quantified with a Qubit 2.0 (Invitrogen). Samples were multiplexed with 12 libraries per lane and sequenced in single-end mode (Rapid Run, 150 bp read length) on an Illumina HiSeq 2000 platform. diff --git a/assays/Brilhaus2015_SE_mRNASeq/protocols/RNAex.md b/assays/Brilhaus2015_SE_mRNASeq/protocols/RNAex.md new file mode 100644 index 0000000000000000000000000000000000000000..4a87be713f40d4c91fff21ad3becf8a2b657cffe --- /dev/null +++ b/assays/Brilhaus2015_SE_mRNASeq/protocols/RNAex.md @@ -0,0 +1,3 @@ +# RNA Extraction + +RNA was isolated from ground tissue using the GeneMatrix Universal RNA Purification Kit (EURx Ltd.). Residues of DNA were removed with DNase (New England Biolabs). \ No newline at end of file diff --git a/isa.investigation.xlsx b/isa.investigation.xlsx index e7fceed9d9dd6d0c62c7c64db6484a7896125ff1..219aa6f02d64a1d1fb6f498c9e1e11c2dd5cf3ef 100644 Binary files a/isa.investigation.xlsx and b/isa.investigation.xlsx differ diff --git a/studies/Brilhaus2015_drought/isa.study.xlsx b/studies/Brilhaus2015_drought/isa.study.xlsx index 10954d9308d909ee9625cca7fa76f0d1c4e58e72..c9b7f3fdb6eec4c1b33c782d02a45a089a492064 100644 Binary files a/studies/Brilhaus2015_drought/isa.study.xlsx and b/studies/Brilhaus2015_drought/isa.study.xlsx differ