From 540b662c756762a9ac01cd32d536f7600043aa46 Mon Sep 17 00:00:00 2001
From: Dominik Brilhaus <brilhaus@nfdi4plants.org>
Date: Thu, 25 Jan 2024 18:10:07 +0100
Subject: [PATCH] restructure
---
.../protocols => }/.gitkeep | 0
.../README.md | 0
.../dataset/.gitkeep | 0
.../160609_GC-MS/160531_SladjanaSamuilov.xlsx | 0
.../160609_GC-MS/160609_GC-MS_SS.xlsx | 0
.../160609_GC-MS/GCMS_SS.pdf | 0
.../160609_GC-MS/GCMS_SS.txt | 0
...ntReport_ISTD_ResultsComplete_B_06_00.xlsx | 0
.../160609_GC-MS/splitless_split.txt | 0
.../Probenliste_Sladjana.xlsx | 0
...te_Sladjana_ausgef\303\274llt_7_2016.xlsx" | 0
.../dataset/160531_Sladjana.batch.bin | 0
.../dataset/160531_Sladjana/Options.xml | 0
...D_ResultsComplete_B_06_00.ReportStatus.xml | 0
...ntReport_ISTD_ResultsComplete_B_06_00.xlsx | 0
.../dataset/160531_Sladjana/batch.results.xsd | 0
.../dataset/160531_Sladjana/graphics.log | 0
.../160531_Sladjana/report.results.xml | 0
.../isa.assay.xlsx | Bin 0 -> 6936 bytes
.../protocols/.gitkeep | 0
assays/metabolite-measurements/isa.assay.xlsx | Bin 6925 -> 0 bytes
assays/metabolites-GCMS/isa.assay.xlsx | Bin 6900 -> 6900 bytes
assays/metabolites-HPLC/dataset/.gitkeep | 0
assays/metabolites-HPLC/isa.assay.xlsx | Bin 6900 -> 6900 bytes
assays/rna-data-processing/isa.assay.xlsx | Bin 6926 -> 6927 bytes
assays/rna-seq/isa.assay.xlsx | Bin 6982 -> 6983 bytes
isa.investigation.xlsx | Bin 8586 -> 8587 bytes
studies/arabidopsis-reference/isa.study.xlsx | Bin 7506 -> 7507 bytes
.../isa.study.xlsx | Bin 10865 -> 10845 bytes
29 files changed, 0 insertions(+), 0 deletions(-)
rename assays/{metabolite-measurements/protocols => }/.gitkeep (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/README.md (100%)
create mode 100644 assays/metabolite-GCMS-MasshunterQuant/dataset/.gitkeep
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160531_SladjanaSamuilov.xlsx (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160609_GC-MS_SS.xlsx (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.pdf (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.txt (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/splitless_split.txt (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana.xlsx (100%)
rename "assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana_ausgef\303\274llt_7_2016.xlsx" => "assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana_ausgef\303\274llt_7_2016.xlsx" (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana.batch.bin (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana/Options.xml (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.ReportStatus.xml (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana/batch.results.xsd (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana/graphics.log (100%)
rename assays/{metabolite-measurements => metabolite-GCMS-MasshunterQuant}/dataset/160531_Sladjana/report.results.xml (100%)
create mode 100644 assays/metabolite-GCMS-MasshunterQuant/isa.assay.xlsx
create mode 100644 assays/metabolite-GCMS-MasshunterQuant/protocols/.gitkeep
delete mode 100644 assays/metabolite-measurements/isa.assay.xlsx
create mode 100644 assays/metabolites-HPLC/dataset/.gitkeep
diff --git a/assays/metabolite-measurements/protocols/.gitkeep b/assays/.gitkeep
similarity index 100%
rename from assays/metabolite-measurements/protocols/.gitkeep
rename to assays/.gitkeep
diff --git a/assays/metabolite-measurements/README.md b/assays/metabolite-GCMS-MasshunterQuant/README.md
similarity index 100%
rename from assays/metabolite-measurements/README.md
rename to assays/metabolite-GCMS-MasshunterQuant/README.md
diff --git a/assays/metabolite-GCMS-MasshunterQuant/dataset/.gitkeep b/assays/metabolite-GCMS-MasshunterQuant/dataset/.gitkeep
new file mode 100644
index 0000000..e69de29
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160531_SladjanaSamuilov.xlsx b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160531_SladjanaSamuilov.xlsx
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160531_SladjanaSamuilov.xlsx
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160531_SladjanaSamuilov.xlsx
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160609_GC-MS_SS.xlsx b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160609_GC-MS_SS.xlsx
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160609_GC-MS_SS.xlsx
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/160609_GC-MS_SS.xlsx
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.pdf b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.pdf
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.pdf
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.pdf
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.txt b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.txt
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.txt
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/GCMS_SS.txt
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/splitless_split.txt b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/splitless_split.txt
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/splitless_split.txt
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/160609_GC-MS/splitless_split.txt
diff --git a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana.xlsx b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana.xlsx
similarity index 100%
rename from assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana.xlsx
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana.xlsx
diff --git "a/assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana_ausgef\303\274llt_7_2016.xlsx" "b/assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana_ausgef\303\274llt_7_2016.xlsx"
similarity index 100%
rename from "assays/metabolite-measurements/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana_ausgef\303\274llt_7_2016.xlsx"
rename to "assays/metabolite-GCMS-MasshunterQuant/dataset/16-0016_Sladjana_Samuilov/Probenliste_Sladjana_ausgef\303\274llt_7_2016.xlsx"
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana.batch.bin b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana.batch.bin
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana.batch.bin
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana.batch.bin
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana/Options.xml b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/Options.xml
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana/Options.xml
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/Options.xml
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.ReportStatus.xml b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.ReportStatus.xml
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.ReportStatus.xml
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.ReportStatus.xml
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/QuantReport_ISTD_ResultsComplete_B_06_00.xlsx
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana/batch.results.xsd b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/batch.results.xsd
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana/batch.results.xsd
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/batch.results.xsd
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana/graphics.log b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/graphics.log
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana/graphics.log
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/graphics.log
diff --git a/assays/metabolite-measurements/dataset/160531_Sladjana/report.results.xml b/assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/report.results.xml
similarity index 100%
rename from assays/metabolite-measurements/dataset/160531_Sladjana/report.results.xml
rename to assays/metabolite-GCMS-MasshunterQuant/dataset/160531_Sladjana/report.results.xml
diff --git a/assays/metabolite-GCMS-MasshunterQuant/isa.assay.xlsx b/assays/metabolite-GCMS-MasshunterQuant/isa.assay.xlsx
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diff --git a/studies/arabidopsis-reference/isa.study.xlsx b/studies/arabidopsis-reference/isa.study.xlsx
index d302ab3476ec608aca62667cec5bfbed95cadbc4..c707ac3f74accd29817933a0d0910127d6340fb5 100644
GIT binary patch
delta 698
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delta 697
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diff --git a/studies/relative_contribution_of_serine_pathways/isa.study.xlsx b/studies/relative_contribution_of_serine_pathways/isa.study.xlsx
index 10f9c15e295820b76a3b14b0615aaac6b6f8b454..9869947fef3a38bb242bd59bcfc7d4f3318de47a 100644
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delta 3259
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delta 3294
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