diff --git a/.gitattributes b/.gitattributes index 365cfbe7808b69dbc1b85e9dcee7c5c83f750cb2..9f22d91249b88ca454b6582ddceec19bf3626b6a 100644 --- a/.gitattributes +++ b/.gitattributes @@ -346,3 +346,4 @@ _publications/Samuilov-2018-PSP/fpls-09-01830.pdf filter=lfs diff=lfs merge=lfs /_publications/Samuilov-2018-BOU/fpls-09-01709.pdf filter=lfs diff=lfs merge=lfs -text /_publications/Samuilov-2018-BOU/Data[[:space:]]Sheet[[:space:]]1.xlsx filter=lfs diff=lfs merge=lfs -text assays/CMML_17-0035_GCMS-MasshunterQuant/dataset/QuantReport_ISTD_ResultsSummary_B_06_00.xlsx filter=lfs diff=lfs merge=lfs -text +assays/rnaseq-GEO-export-GSE112254/dataset/GSE112254_SupplementalDataset1.csv filter=lfs diff=lfs merge=lfs -text diff --git a/README.md b/README.md index a8a71501f8bd197880271ed94256eb451a9ce3af..89acfb742748a2177c365f10ff7d93d46059a0c7 100644 --- a/README.md +++ b/README.md @@ -10,6 +10,7 @@ This ARC contains data of the following publications - [Original publication](#original-publication-1) - [License (of publication)](#license-of-publication-1) - [Data availability](#data-availability-1) +- [Overview Map](#overview-map) ## [Samuilov-2018-BOU](_publications/Samuilov-2018-BOU) @@ -42,3 +43,57 @@ Copyright © 2018 Samuilov, Rademacher, Brilhaus, Flachbart, Arab, Kopriva, Webe ### Data availability The read data have been submitted to the NCBI GEO under accession number [GSE1122545](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?&acc=GSE112254). + +## Overview Map + +<!-- +arc a list | grep "^--Assay" | uniq | sort | sed 's/--Assay: /assays\//g' +arc s list | grep "^Study" | uniq | sort | sed 's/Study: /studies\//g' +--> + +```mermaid +graph TD + +a1[assays/CMML_16-0016_GCMS] +a2[assays/CMML_16-0016_GCMS-MasshunterQuant] +a3[assays/CMML_16-0016_HPLC] +a4[assays/CMML_17-0035_GCMS] +a5[assays/CMML_17-0035_GCMS-MasshunterQuant] + +a6[assays/rna-seq] +a7[assays/rna-data-processing] + +a8[assays/rnaseq-GEO-export-GSE86380] +a9[assays/rnaseq-GEO-export-GSE112254] + +s0[studies/arabidopsis-reference] +s1[studies/bou_psp_DayNight] +s2[studies/psp_DayNight_Cd] +p2[_publications/Samuilov-2018-PSP] +p1[_publications/Samuilov-2018-BOU] + +s0 --> a6 --> a7 +s1 --> a6 +s2 --> a6 + +a7 --> a8 --> p1 +a7 --> a9 --> p2 + +s1 --> a1 --> a2 --> p1 +s1 --> a3 --> p1 +s2 --> a4 --> a5 --> p2 +a2 --> p2 + +%% Defining node styles + classDef study fill:#b4ce82, stroke:#333; + classDef assay fill:#ffc000; + classDef data fill:#c21f3a,color:white; + classDef publication fill:#2d3e50,color:white; + +%% Assigning styles to nodes + class s1,s2 study; + class a1,a2,a3,a4,a5,a6,a7,a8,a9 assay; + class d1,d2,d3,d4,d5,d6,d7,d8,d9,d10,d11,d12,d13,d14,d15,l4 D; + class p1,p2 publication; + +``` diff --git a/assays/rnaseq-GEO-export/dataset/.gitkeep b/assays/.gitkeep similarity index 100% rename from assays/rnaseq-GEO-export/dataset/.gitkeep rename to assays/.gitkeep diff --git 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