# docker setup
rebuild the image with one final detail so as to 
match the UID of the host and be able to share files
w/o continuous premission trouble

## build docker image

`sudo docker build --build-arg USERID=$(id -u) -t rnaseqme --rm .`

## start docker container

Do this from the parent directory of the 'rnaseq-workshop' repository, so that the mounted folder contains the repository

`sudo docker run -it --name rnalive --rm --mount type=bind,source="$(pwd)"/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rnaseqme:latest`

Or for course participants 
`docker run -it --name rnalive --mount type=bind,source="$(pwd)"/rnaseq-workshop,target=/home/zim-gast/rnaseq-workshop rnaseqme:latest`

