
# Slides

- [slides01_housekeeping.pdf](slides01_housekeeping.pdf)
  - Welcome / intro
  - Agendas
  - Wrap-ups
  - Feedbacks
  - Games / Activation

- [slides02_biocomputing](slides02_biocomputing.pdf)
  - need for computing
  - don't fear the terminal

- [slides03_experimental](slides03_experimental.pdf)
  - Experimental design
  - quality RNA / quality control
  - illumina workflow

- [slides04_quantification](slides04_quantification.pdf)
  - de-multiplexing
  - trimming
  - alignment, mapping, quantification
  

- [slides05_bio_knowledge](slides05_bio_knowledge.pdf)
  - overview of downstream analyses after mapping

- [slides06_statistics](slides06_statistics.pdf)
  - Count data
  - Negative binomial
  - Multiple hypothesis correction, FDR

- [slides07_clustering](slides07_clustering.pdf)
  - distance metrics
  - hierarchical
  - k-means
  - PCA

- [slides08_long_reads](slides08_long_reads_w_notes.pdf)
  - isoform sequencing
  - IsoSeq + Nanopore
  - technique, experimental, analysis

- [slides09_resources](slides09_resources.pdf)
  - data
  - tools
  - help
